Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J11
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 149 2e-36
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 140 5e-34
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 136 9e-33
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 136 9e-33
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 124 4e-29
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 85 2e-17
08_02_0383 - 16539472-16539633,16543044-16543205 44 9e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.010
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 34 0.053
01_05_0586 + 23443371-23444645 29 2.0
03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480... 29 2.6
06_01_0180 - 1397432-1399969 28 3.5
11_06_0289 - 21969248-21973516 28 4.6
11_06_0185 + 21018045-21022307 28 4.6
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 28 4.6
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027... 28 4.6
01_05_0509 + 22811184-22812038,22813493-22814020 28 4.6
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 27 6.0
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 8.0
04_03_0631 - 18190195-18190686,18190866-18191066 27 8.0
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 149 bits (360), Expect = 2e-36
Identities = 69/113 (61%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Frame = +3
Query: 66 KEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 242
K G KN+GLGFKTPRE ++ + K CPFTG VSIRGRI+ G KM RTI++RR
Sbjct: 21 KGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRR 80
Query: 243 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 401
+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV+
Sbjct: 81 NYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVI 132
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 140 bits (339), Expect = 5e-34
Identities = 70/120 (58%), Positives = 85/120 (70%), Gaps = 8/120 (6%)
Frame = +3
Query: 66 KEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 242
K G KN+GLGFKTPRE ++ + K CPFTG VSIRGRI+ G KM RTI++RR
Sbjct: 30 KGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRR 89
Query: 243 DYLHYLPKYNR-------FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 401
+YLH++ KY R +EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 90 NYLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVL 148
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 136 bits (329), Expect = 9e-33
Identities = 69/122 (56%), Positives = 85/122 (69%), Gaps = 10/122 (8%)
Frame = +3
Query: 66 KEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 242
K G K++GLGFKTPRE ++ + K CPFTG VSIRGRI+ G KM RTI++RR
Sbjct: 30 KGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRR 89
Query: 243 DYLHYLPKYN---------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 395
+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 90 NYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFN 148
Query: 396 VL 401
VL
Sbjct: 149 VL 150
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 136 bits (329), Expect = 9e-33
Identities = 69/122 (56%), Positives = 85/122 (69%), Gaps = 10/122 (8%)
Frame = +3
Query: 66 KEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 242
K G K++GLGFKTPRE ++ + K CPFTG VSIRGRI+ G KM RTI++RR
Sbjct: 30 KGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRR 89
Query: 243 DYLHYLPKYN---------RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFN 395
+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN
Sbjct: 90 NYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFN 148
Query: 396 VL 401
VL
Sbjct: 149 VL 150
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 124 bits (299), Expect = 4e-29
Identities = 69/137 (50%), Positives = 85/137 (62%), Gaps = 25/137 (18%)
Frame = +3
Query: 66 KEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 242
K G K++GLGFKTPRE ++ + K CPFTG VSIRGRI+ G KM RTI++RR
Sbjct: 30 KGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRR 89
Query: 243 DYLHYLPKYN------------------------RFEKRHRNMSVHLSPCFRDVEIGDIV 350
+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V
Sbjct: 90 NYLHFVKKYQRQVNNYGFYLCFFSFFFPISDLGCRYEKRHSNIPAHVSPCFR-VKEGDHV 148
Query: 351 TIGECRPLSKTVRFNVL 401
IG+CRPLSKTVRFNVL
Sbjct: 149 IIGQCRPLSKTVRFNVL 165
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 85.4 bits (202), Expect = 2e-17
Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Frame = +3
Query: 66 KEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 242
K G K++GLGFKTPRE ++ + K CPFTG VSIRGRI+ G KM RTI++RR
Sbjct: 30 KGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRR 89
Query: 243 DYLHYLPKYNR 275
+YLH++ KY R
Sbjct: 90 NYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 43.6 bits (98), Expect = 9e-05
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +3
Query: 189 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 368
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 369 PLSK 380
PLSK
Sbjct: 62 PLSK 65
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 189 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 368
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 369 PLSKTVRF 392
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 34.3 bits (75), Expect = 0.053
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +3
Query: 21 SETGDGVPQSQGGHEKEGYETSKNVGLGFKTPREPLKAHTLIKCPFTGNVSIRGRILTGV 200
+E+G G+ + GH +E Y T GL +P + T F+G +S+ G V
Sbjct: 355 TESGTGLVHTAPGHGQEDYITGLKYGLPIVSPVDDEGNFTAEAGQFSG-LSVLGAGNAAV 413
Query: 201 VQKMKMQRTIVIRRDYLHYLP 263
V + Q ++++ Y H P
Sbjct: 414 VNYLDEQCSLILEEPYKHKYP 434
>01_05_0586 + 23443371-23444645
Length = 424
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 235 SGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKS 339
+GA S TCLN T+ S G Y ++ G W S
Sbjct: 35 TGASFSRTCLNLTNAVSGIGVLSMPYAVSQGGWLS 69
>03_05_0502 +
24947444-24947665,24947768-24947823,24947929-24948099,
24948508-24948631,24949086-24949142,24949216-24949312,
24949619-24949826,24950637-24950697,24950793-24950846
Length = 349
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 176 DGHVTREWTFYQCMCLQRLTG 114
DG +TR W F +CMC+ + G
Sbjct: 86 DGTLTRYWEFERCMCVYVVVG 106
>06_01_0180 - 1397432-1399969
Length = 845
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 27 TGDGVPQSQGGHEKEGYETSKNVGLG 104
TG S+GG K GY S +GLG
Sbjct: 475 TGQSFTTSKGGSSKSGYTFSSTLGLG 500
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 201 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 335
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 201 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 335
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 153 PFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 269
PFTG++S G + + KM + +V +DYLH K+
Sbjct: 471 PFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>02_05_0796 +
31800256-31800528,31800635-31800758,31802642-31802771,
31804336-31804414,31804848-31805133,31805273-31805385
Length = 334
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 78 ETSKNVGLGFKTPREPLKAHTLIKCPFTGNVSIRGR 185
ETS++ G GF T REP A ++ P N +I GR
Sbjct: 82 ETSRSKGYGFVTFREPESAREAVRNP---NPTIGGR 114
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 232 LSGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKSETSSQLASA 366
++GA +CLN +++ S G Y L+ G W S T + A
Sbjct: 65 MTGASFGRSCLNLSNIISGIGMLSVPYALSQGGWLSLTLFTMVGA 109
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 169 TLPVNGHFINVCAFNGSRGVLKPRPTFLDVSYPSF 65
+LP NGH N N G P PT P F
Sbjct: 757 SLPKNGHVANGFGNNSGPGCPSPTPTIFSYPDPEF 791
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 185 YPDRRCSENENAANNCYQARLSPLPA*IQQI*EATQEHVCSSIAL 319
Y DRR ++E A Y+A+LS + Q + E T + +S A+
Sbjct: 205 YLDRRPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASAAV 249
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 274 DLRSDTGTCLFIYR-LASGTWKSETSSQLASA 366
D +S TGTC F+ R L S ++K + S L++A
Sbjct: 87 DRKSTTGTCQFLGRSLVSWSFKKQNSIALSTA 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,658,282
Number of Sequences: 37544
Number of extensions: 275663
Number of successful extensions: 700
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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