Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J09
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   192   3e-50
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   192   3e-50
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   5.8  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   5.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   5.8  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  192 bits (468), Expect = 3e-50
 Identities = 90/185 (48%), Positives = 121/185 (65%)
 Frame = +3

Query: 6   RLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXX 185
           RL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG       
Sbjct: 50  RLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRA 109

Query: 186 XXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDG 365
                    Y G TE  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DG
Sbjct: 110 LAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDG 169

Query: 366 GLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKYIEI 545
           GL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  +DE+ +++QF   I  
Sbjct: 170 GLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIAD 229

Query: 546 GVNPD 560
           G+  D
Sbjct: 230 GIESD 234


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  192 bits (468), Expect = 3e-50
 Identities = 90/185 (48%), Positives = 121/185 (65%)
 Frame = +3

Query: 6   RLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXX 185
           RL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG       
Sbjct: 50  RLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRA 109

Query: 186 XXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDG 365
                    Y G TE  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DG
Sbjct: 110 LAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDG 169

Query: 366 GLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKYIEI 545
           GL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  +DE+ +++QF   I  
Sbjct: 170 GLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIAD 229

Query: 546 GVNPD 560
           G+  D
Sbjct: 230 GIESD 234


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 352 PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAPV*RLSKPSL 191
           PF   +T  P++  +  +S  HL      S+ S LY S      P    S P L
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLL 270


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = -1

Query: 412 ASYPGNLLIECGTFKPPSTA-PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP 236
           +++P N  +    F   ST+ P  AP + +P+    KP++    N     S+ +   SSP
Sbjct: 375 STFP-NPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433

Query: 235 VTSVA----PV*RLSKPSLCNNL 179
           + S A    PV + S P L   L
Sbjct: 434 LASNAENKPPVAQQSPPVLLPTL 456


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 471  AEYMRSLEQEDEDSFKRQFGKYIE 542
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,086
Number of Sequences: 5004
Number of extensions: 50849
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)