Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J09
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 210 6e-55
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 209 1e-54
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489... 32 0.27
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 3.4
02_05_0870 - 32354117-32354416 29 3.4
10_08_0184 - 15570471-15570684,15571085-15571354,15571489-155717... 28 4.5
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 28 4.5
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 28 4.5
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 28 5.9
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 7.8
04_03_0204 + 12643435-12644001 27 7.8
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 210 bits (513), Expect = 6e-55
Identities = 93/180 (51%), Positives = 128/180 (71%)
Frame = +3
Query: 21 LSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXX 200
++NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG
Sbjct: 53 VTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRG 112
Query: 201 XDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVP 380
D Y G E TG++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++P
Sbjct: 113 LDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIP 171
Query: 381 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKYIEIGVNPD 560
HS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +E+ + F+ F +Y++ G++ D
Sbjct: 172 HSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDAD 231
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 209 bits (511), Expect = 1e-54
Identities = 93/180 (51%), Positives = 128/180 (71%)
Frame = +3
Query: 21 LSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXX 200
++NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG
Sbjct: 53 VTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRG 112
Query: 201 XDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVP 380
D Y G E TG++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++P
Sbjct: 113 LDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIP 171
Query: 381 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKYIEIGVNPD 560
HS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +E+ + F+ F +Y++ G++ D
Sbjct: 172 HSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDAD 231
>03_05_0996 -
29547974-29547977,29548442-29548620,29548827-29548905,
29549556-29549577,29550370-29550439,29550589-29550667,
29551252-29551268,29552214-29552295,29553540-29553630,
29554354-29554498,29554653-29554964
Length = 359
Score = 32.3 bits (70), Expect = 0.27
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -1
Query: 454 MCALCTSALNFLDSASYPGNLLIECGTFKPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAP 275
+ AL T L+F+ + ++P + CG+ PS T P VR P +P
Sbjct: 4 LLALSTPRLHFVAALNHPSSF--PCGSSPLPSLIQCRRRLTNRPATVRLSPAPSPCPMSP 61
Query: 274 GPLST-GSTLYSSPVTSVAPV*RLSKPSLC 188
PL+T Y+S +A LS S+C
Sbjct: 62 PPLNTVRCGRYTSTPLDIAACPPLSVLSIC 91
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 136 LTMLLPTAL-VCCWQEDCCRGSA 201
L++L PT L CW DCC GS+
Sbjct: 691 LSVLEPTFLNESCWSSDCCSGSS 713
>02_05_0870 - 32354117-32354416
Length = 99
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 454 MCALCTSALNFLDSASYPGNLLIECGTFKPPSTAP 350
+C L T F + YP NLLI C +P T+P
Sbjct: 39 VCFLSTGYDGFKHTPPYPLNLLIVCRNQQPHGTSP 73
>10_08_0184 -
15570471-15570684,15571085-15571354,15571489-15571711,
15571809-15571875,15571996-15572137,15572226-15572290
Length = 326
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -3
Query: 560 IWIYTD------FDILSKLSLERIFVFLLKATHVLCHM*SKDV 450
+W+YTD D L++ ++ R+F+F+ K V+ H+ D+
Sbjct: 278 LWLYTDDRDVVDMDTLTRENIRRLFMFISKLPLVVLHVVDLDI 320
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 242 ITSDFSGTC-VETVQAEPLQQSSCQQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVIT 69
+ + TC VET +AEP + + S VGSS ++ W F V + N +T
Sbjct: 264 VRQSLAWTCFVETPRAEPAPVVPQEGEASGVGSSEAPSLFAGSV-WGFQMVTTRRNAVT 321
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 346 MAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP 236
M + P+ RAKP K N P P++ G + S P
Sbjct: 64 MLTSGAGPLTTRAKPKPKNRANPPVPIAPGRQILSIP 100
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -2
Query: 258 VQHYIHHQ*LQWHLCRDCPSRASATI--FLPATDQCSRQQHS*SNPP-*YHSVGVHESRQ 88
+ I +Q +Q + RD ++ I L +T CSR++ NPP H HE ++
Sbjct: 40 IHEQIQNQAMQAQVHRDEIMQSMKMIQEMLSSTASCSRKEAKVDNPPHGQHDNVTHEQQR 99
Query: 87 HR 82
HR
Sbjct: 100 HR 101
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 283 NAPGPLSTGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRP 161
+APG S S TS P S P CN L ++N P
Sbjct: 851 SAPGSSPVFSLAVGSGTTSATPA-SASSPIFCNRLTSTNAP 890
>04_03_0204 + 12643435-12644001
Length = 188
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 421 LDSASYPGNLLIECGTFKPPSTA 353
LD+A Y G L EC PP TA
Sbjct: 67 LDAARYAGELRTECSLRPPPPTA 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,257
Number of Sequences: 37544
Number of extensions: 348057
Number of successful extensions: 1050
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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