Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J09
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 233 6e-62
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 31 0.43
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF016422-1|AAG24175.1| 335|Caenorhabditis elegans Seven tm rece... 28 4.0
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 7.0
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 9.3
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor... 27 9.3
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 233 bits (570), Expect = 6e-62
Identities = 109/187 (58%), Positives = 136/187 (72%), Gaps = 1/187 (0%)
Frame = +3
Query: 6 RLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXX 185
RLIVR++NKDV Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY TG
Sbjct: 50 RLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRH 109
Query: 186 XXXXXXDSLYTGATEVTGDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVD 362
DS Y G E+TG++YNVE D P F+ LD+GLARTTTG+++F MKG D
Sbjct: 110 LKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMKGVAD 167
Query: 363 GGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKYIE 542
GG+NVPHS RF G+D ESK++NAE HR I G HVA+YM L++EDED +KRQF K++
Sbjct: 168 GGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLA 227
Query: 543 IGVNPDD 563
G+N D+
Sbjct: 228 AGLNADN 234
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 249 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 425
N EP++ G F C+L TT+G+R G + L + ++FPG +
Sbjct: 68 NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127
Query: 426 F 428
F
Sbjct: 128 F 128
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 67 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 171
RV+ ++L P+L N+ A VSRW + LP + CC
Sbjct: 77 RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 67 RVITLSVL----PTLMNSHAMVSRWV*LTMLLPTALVCC 171
RV+ ++L P+L N+ A VSRW + LP + CC
Sbjct: 77 RVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCC 115
>AF016422-1|AAG24175.1| 335|Caenorhabditis elegans Seven tm
receptor protein 238 protein.
Length = 335
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -3
Query: 554 IYTDFDIL---SKLSLERIFVFLLKATHVLCHM*SKDVCSMYFCIKF 423
+++ DIL S + IF+ + +A ++ +K+V SM FC+ F
Sbjct: 50 LFSTLDILLAPDAYSYDTIFIMITRADKLILPPCTKEVASMMFCVLF 96
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 364 PSTAPFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP--VTSVAPV*RLSKPS 194
PST + P + PT+ P +TG+T +SP +TS AP + PS
Sbjct: 485 PSTQGVPTSTSNQPTPSTSNPTTPKSTVTASPSTTGATSTASPSTITSSAPTSQSHSPS 543
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 370 KPPSTAPFMAPNTRAPVVVRAKPTSK 293
+PP AP TRAP RA P ++
Sbjct: 294 QPPPRGSTAAPGTRAPPATRAPPATR 319
>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
protein protein1, isoform b protein.
Length = 1284
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/57 (26%), Positives = 20/57 (35%)
Frame = -1
Query: 529 PNCLLKEXXXXXSRLRMYSATCSPKMCALCTSALNFLDSASYPGNLLIECGTFKPPS 359
PNC+L R + C +C C + FL+ G L KP S
Sbjct: 545 PNCMLCNTRFTIITRRHHCRACGRVLCGSCCNEKAFLEYLQEEGKKLQAVRVCKPCS 601
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,985
Number of Sequences: 27780
Number of extensions: 297977
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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