Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J07
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    27   0.72 
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   2.2  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   2.9  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    24   3.8  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    24   3.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    24   5.0  

>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 0.72
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 123 LKVCISKT*SNTK*SWVFTDVA 188
           L +CIS T  N K +W++T +A
Sbjct: 526 LSICISSTAVNPKLTWMYTGIA 547


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 208 NVKIYVVATSVNTQDYLVFDYVLLIHTFKYKDLPDSKNFTF 86
           +V + VVATS+N  DY + +   +I    +K LP+   + F
Sbjct: 45  DVLVEVVATSINPLDYKLMNTYQMIAKALFK-LPNIPGYDF 84


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 143 NIIKY*IVLGIHRCCNDVYFDVNNSLHKFVLHKDWLQ 253
           N++KY  VL IH   +  +F++ +      +HK+ LQ
Sbjct: 264 NLVKY--VLSIHSVPSRTFFEMASHFSNNKMHKERLQ 298


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +1

Query: 127 KCVLVKHNQILNSPGYSQMLQRR 195
           K  ++K  ++L SPG+SQ+++++
Sbjct: 87  KTTIMKQMRLLYSPGFSQVVRKQ 109


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 108 QTVRTSLSLQTSAVEISIGHLKHNLKDKAL 19
           Q+  TSL++ T   E  + H K+N   K L
Sbjct: 328 QSEHTSLNIHTGLAETLVQHTKNNYFQKLL 357


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 161  IVLGIHRCCNDVYFDVNNSLHKFVLHKDWLQ 253
            I +   R C DV     + LHK +++ D ++
Sbjct: 944  IYVSTERMCQDVVISTTSILHKTIVNLDTIK 974


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,161
Number of Sequences: 5004
Number of extensions: 19065
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)