Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J07
         (287 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0782 + 6065249-6065265,6065367-6065440,6065747-6065821,606...    27   2.4  
04_01_0615 - 8060085-8060972                                           27   3.2  
10_08_0332 - 16843295-16843356,16843884-16846656                       26   4.2  
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211...    25   7.4  
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017           25   7.4  
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    25   7.4  
08_02_0086 - 12133709-12133781,12133860-12134011,12134501-121345...    25   9.8  
01_01_0510 - 3723983-3724416,3724895-3725766,3725797-3726791,372...    25   9.8  

>07_01_0782 +
           6065249-6065265,6065367-6065440,6065747-6065821,
           6065987-6066102
          Length = 93

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 199 IYVVATSVNTQDYLVFDYVLLIHTFK 122
           IY      + +DY V DYVL+IH  K
Sbjct: 63  IYGYKCGFDEEDYPVIDYVLVIHAAK 88


>04_01_0615 - 8060085-8060972
          Length = 295

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 99 RTSLSLQTSAVEISIGHLK 43
          RTS+++QTS  EI+ GH K
Sbjct: 12 RTSMAMQTSITEIAAGHDK 30


>10_08_0332 - 16843295-16843356,16843884-16846656
          Length = 944

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 170 GIHRCCNDVYFDVNNSLHKFVLHKDWLQFTDCTYL 274
           G+HR     Y DV+ +     L  DW Q T+ TYL
Sbjct: 601 GVHRILQ--YLDVSGNKLTGELSSDWGQCTNLTYL 633


>07_01_0292 -
           2117212-2117326,2117402-2117527,2117654-2117791,
           2117904-2118323,2118421-2118591,2118701-2118880,
           2118988-2119140,2119226-2119384,2119841-2120152,
           2120285-2120452,2120851-2121050,2122207-2122589,
           2123244-2123625
          Length = 968

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 143 NIIKY*IVLGIHRCCNDVYFDVNNSLHKFVLHKDWLQFTD 262
           N I   + LG HR           SL+  +L+KDW +  D
Sbjct: 411 NWINIAVTLGTHRTPFQCLVRYQRSLNHCILNKDWAEEED 450


>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
          Length = 824

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 176 HRCCNDVYFDVNNSLHKFVLHKDWLQFTDCTYLQ 277
           HRC  D++  +N + H F+    W  +T+   ++
Sbjct: 216 HRCWEDIFDAINGARH-FIYITGWSVYTEIALIR 248


>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 279 CCKYVQSVNC-NQSLCK 232
           CC YV ++NC +QSL K
Sbjct: 401 CCLYVDAINCVSQSLLK 417


>08_02_0086 -
           12133709-12133781,12133860-12134011,12134501-12134573,
           12134665-12134810,12135029-12135108,12136071-12136245
          Length = 232

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 276 CKYVQSVNCNQSLCK 232
           CKYV S++C +SL K
Sbjct: 121 CKYVMSIDCAESLQK 135


>01_01_0510 -
           3723983-3724416,3724895-3725766,3725797-3726791,
           3727332-3727439
          Length = 802

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 176 HRCCNDVYFDVNNSLHKFVLHKDWLQFTDCTYLQ 277
           HRC  D++  ++N+ H  +    W  +T+ T ++
Sbjct: 212 HRCWEDIFDAISNAQH-LIYITGWSVYTEITLVR 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,554,244
Number of Sequences: 37544
Number of extensions: 102633
Number of successful extensions: 232
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)