Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J07
(287 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 29 0.53
Z34533-8|CAA84297.2| 616|Caenorhabditis elegans Hypothetical pr... 27 2.2
AY552607-1|AAS89254.1| 616|Caenorhabditis elegans heparan sulfa... 27 2.2
Z79600-4|CAB01877.1| 213|Caenorhabditis elegans Hypothetical pr... 27 2.9
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 26 5.0
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 25 8.7
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 25 8.7
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 25 8.7
AC006772-2|AAF60609.2| 341|Caenorhabditis elegans Hypothetical ... 25 8.7
AC006698-1|AAF39993.3| 398|Caenorhabditis elegans Hypothetical ... 25 8.7
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical protein
K10G4.5 protein.
Length = 1251
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -2
Query: 262 VREL*PIFVQDEFMQRVVNVKIYVVATSVNTQDYLVFDYVLLIHTFKYKDLPDSKN 95
+R+L FV DEF V K + +N+ DYL ++ + KDL D KN
Sbjct: 926 LRQLEFKFVDDEFKTPVTTYKEMLEIDQLNSVDYLSAEFT--VGRVALKDLRDMKN 979
>Z34533-8|CAA84297.2| 616|Caenorhabditis elegans Hypothetical
protein B0285.5 protein.
Length = 616
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = -2
Query: 244 IFVQDEFMQRVVNVKIYVVATSVNTQDYLVFDYVLLIHTFKYKDLPDSKNFTFFANFSS* 65
+F DE M +VVN+ + YL L + +F +K + +FT A
Sbjct: 220 LFFNDEQMGKVVNISAGAALANAGAYVYLDKSPDLHVISFDWKPYEANSSFTVLAKMKQD 279
Query: 64 DI 59
D+
Sbjct: 280 DL 281
>AY552607-1|AAS89254.1| 616|Caenorhabditis elegans heparan sulfate
C5-glucuronyl epimeraseprotein.
Length = 616
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = -2
Query: 244 IFVQDEFMQRVVNVKIYVVATSVNTQDYLVFDYVLLIHTFKYKDLPDSKNFTFFANFSS* 65
+F DE M +VVN+ + YL L + +F +K + +FT A
Sbjct: 220 LFFNDEQMGKVVNISAGAALANAGAYVYLDKSPDLHVISFDWKPYEANSSFTVLAKMKQD 279
Query: 64 DI 59
D+
Sbjct: 280 DL 281
>Z79600-4|CAB01877.1| 213|Caenorhabditis elegans Hypothetical
protein F59C6.6 protein.
Length = 213
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 244 IFVQDEFMQRVVNVK-IYVVATSVNTQDYLVFDYVLLIH-TFKYKDLP 107
+F ++FM R N K + V T Y++ YV++IH ++ K++P
Sbjct: 11 MFRYEDFMDRWTNEKGEFDFKAYVTTDAYMITPYVVIIHRCWESKEVP 58
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 74 EVCKESEVLTVWQIFILK 127
EVCKE E LTV Q ILK
Sbjct: 175 EVCKEGEPLTVEQAKILK 192
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = +2
Query: 26 LSLRLCLRCPIDIS-------TAEVCKESEVLTVWQIFILKSVY 136
LS+R+ CP+D+S T ++C + + Q+ IL +Y
Sbjct: 166 LSVRVSSNCPMDVSRFPFDSQTCQICFCLPIFNIRQVKILNEIY 209
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 244 IFVQDEFMQRVVNVKIYVVATSVNTQDYLVF 152
+FV+ F RVVN+ + A + T ++ VF
Sbjct: 442 VFVEIRFEGRVVNITDIITAANCKTPNFPVF 472
>Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical
protein D1081.3 protein.
Length = 752
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -2
Query: 232 DEFMQRVVNVKIYVVATSVNTQDYLVFDYVLLIHTFKYKDLPDSKN 95
D + +R+ V I+ ++ +VF ++ ++ T K+K L +N
Sbjct: 293 DVYKERIDLVPIFDRLLTMKFLSIIVFSFISIVVTVKWKSLTTDEN 338
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 282 RCCKYVQSVNCNQSLCKTNLC 220
RC YV++V CN + C C
Sbjct: 550 RCGTYVETVYCNTNPCTGGYC 570
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 282 RCCKYVQSVNCNQSLCKTNLC 220
RC YV++V CN + C C
Sbjct: 550 RCGTYVETVYCNTNPCTGGYC 570
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 249 NQSLCKTNLCRELLTSKYTSLQHL 178
N +C CRE+ S YT +HL
Sbjct: 115 NNVMCPLGDCREVFASLYTLRRHL 138
>AC006772-2|AAF60609.2| 341|Caenorhabditis elegans Hypothetical
protein Y46D2A.1 protein.
Length = 341
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 187 ATSVNTQDYLVFDYVLLIHTFKY 119
ATSVNT +V D+V L H +
Sbjct: 192 ATSVNTTGLIVNDFVFLEHVVNF 214
>AC006698-1|AAF39993.3| 398|Caenorhabditis elegans Hypothetical
protein W10C4.1 protein.
Length = 398
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 154 FDYVLLIHTFKYKDLPDSKNFTFFANFSS 68
FD +TF+Y LP + FAN++S
Sbjct: 82 FDRFAFNYTFRYLYLPSKMHLIAFANWTS 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,141,440
Number of Sequences: 27780
Number of extensions: 109329
Number of successful extensions: 291
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -