Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J07
         (287 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.080
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   3.0  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    20   7.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 0.080
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = -3

Query: 246 QSLCKTNLCRELLTSKYTSLQHL*IPRTI*YLIMFY*YTLLSIKICQTVRTSLSLQTS 73
           ++L +     ++L  KY S++ + IP TI Y+I+F      +I  C  +  + ++QT+
Sbjct: 18  KNLTEAEYLAKVLGPKYLSMRMV-IPLTIIYMIIFVTGIFGNITTCTVIIKNPAMQTA 74


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 14   EHNALSLRLCL 46
            EH A  LRLCL
Sbjct: 1089 EHGAAGLRLCL 1099



 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 238 QRLVTIHGLHI 270
           QRL ++H LH+
Sbjct: 89  QRLTSLHELHV 99


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 42  HNLKDKALCSFGIC 1
           HNL  K  C  G+C
Sbjct: 114 HNLVGKEACKQGVC 127


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 42  HNLKDKALCSFGIC 1
           HNL  K  C  G+C
Sbjct: 114 HNLVGKEACKQGVC 127


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 255 NCNQSLCKTNLCREL 211
           NC + + K ++CR++
Sbjct: 31  NCKRHVIKPHICRKI 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,915
Number of Sequences: 438
Number of extensions: 1322
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)