Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J06
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    27   2.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.1  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    25   9.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.0  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   9.0  

>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 281 TRGSETNEVMAFKYH-YLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDGV 457
           T   +T E+ A+    Y S I+R    I  ++  + K +KK+D   + SK LL    D  
Sbjct: 258 TDNLDTPELRAYCVDKYASQIMRAFIRIDFER--SKKTKKKHDP-RLVSKLLLSNEYDLK 314

Query: 458 SLDLMDTFLKD 490
            L  M+T LKD
Sbjct: 315 ELPFMETLLKD 325


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 470 MDTFLKDCIREFPYRECTTFHQMVTSLT--SKDPP--TALSVINCTINGQRGF 616
           ++ +  +CI     RE   F+  +TSL+  S +PP  +   VI+  +NG   F
Sbjct: 245 LENYFVECISWIENREFVVFYSPLTSLSNESDEPPHESECFVISVGMNGHFNF 297


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/39 (23%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 320 YHYLSYILREIHNIKNKQKPADKDEKK-YDVVEIFSKKL 433
           YH   Y+LR++H + + +  +  D+ +   ++E++S ++
Sbjct: 166 YHKFKYLLRQMHELLSDENNSVADQNRGTHLLELYSLEI 204


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 299  NEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDGVSLD---L 469
            +++M + + + S  + ++++   K  P   D K Y+  ++   KL+      +      L
Sbjct: 1540 SDIMGWNF-FKSPEIADLNHYIPKTDPRLCDTKTYEESKLIIWKLICQKACSLLFKYDIL 1598

Query: 470  MDTFLKDCIREF 505
            +D+F++DCIR F
Sbjct: 1599 LDSFIEDCIRMF 1610


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 501 SLIQSFRNVSIRSKDTPSLPGFSSFLENIST 409
           SLI+SF N+++ S  T  L  +S+   ++ST
Sbjct: 359 SLIESFNNITMESVLTECLNDWSTTWSSVST 389


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +2

Query: 383 DKDEKKYDVVEIFSKK-----LLK--PGKDGVSLDLMDTFLKDCIREFPYRECTTFHQMV 541
           D DE   D+ E+ ++K     LLK   GK  +S    ++    C+       C+T   ++
Sbjct: 163 DADEIIPDIKEVLAEKRKKDELLKNRKGKKEISDSEPESDHDSCVSTDTVASCSTEQSLI 222

Query: 542 TSLTSK 559
           TS TSK
Sbjct: 223 TSNTSK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,904
Number of Sequences: 5004
Number of extensions: 52968
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)