Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J06
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1057 + 23624454-23624954,23625582-23625971                       29   2.3  
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431...    28   5.3  
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958...    28   5.3  
11_01_0384 - 2908789-2908991,2909104-2909464,2909574-2909731,290...    27   9.2  
06_03_0558 - 22139878-22139895,22141073-22142404,22143355-221438...    27   9.2  

>07_03_1057 + 23624454-23624954,23625582-23625971
          Length = 296

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 497 REFPYRECTTFHQMVTSLTSKDPPTALSVI 586
           RE PY EC +  Q+  S+T   PP AL  I
Sbjct: 223 REMPYAECDSVVQIYHSVTRGVPPAALKRI 252


>09_06_0132 -
           21042653-21042873,21042950-21043027,21043106-21043167,
           21043504-21043578,21043664-21043752,21043825-21043905,
           21044939-21045076,21046299-21046429,21046521-21046592,
           21047218-21047275,21047362-21047461,21047544-21047617,
           21047701-21047836,21047913-21048137,21048211-21048446,
           21048949-21049081,21049195-21049484
          Length = 732

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 606 CPFIVQFITDNAVGGSLLVRDV 541
           CP+ +Q+++DN     +LV DV
Sbjct: 179 CPYSIQYLSDNTSSSGVLVEDV 200


>03_04_0037 +
           16694760-16695227,16695563-16695642,16695735-16695828,
           16695973-16696071,16696650-16696742,16696822-16696941,
           16697422-16697525,16697734-16697806,16698023-16698085
          Length = 397

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 323 HYLSYILREIHNIKNKQKPADKDEKKYDVVEIFS 424
           +Y+S +LR+  + + K  PAD D  K D+ E+F+
Sbjct: 131 NYISRVLRKSSSDRGKAPPAD-DTAKQDLCEVFT 163


>11_01_0384 -
           2908789-2908991,2909104-2909464,2909574-2909731,
           2909877-2910097,2910909-2911139,2911545-2911582,
           2911700-2911804
          Length = 438

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 500 EFPYRECTTFHQMVTSLTSKDPPTALSVINCTINGQRGFVDA 625
           E PY EC  F Q+   +T    P ALS +       RGF+++
Sbjct: 233 ECPYSECKGFIQIYKKITEGVKPAALSKVKDA--EVRGFIES 272


>06_03_0558 -
           22139878-22139895,22141073-22142404,22143355-22143804,
           22144247-22144315
          Length = 622

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 62  YIPREEIAYYSTIQGQQKEPYLP-PVLLDSLHKFVL 166
           ++ R E+A +S   G+Q++  LP PV++  + +F L
Sbjct: 391 FVERPEVAVFSVDGGRQRQTLLPSPVVMQHMVRFEL 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,479,952
Number of Sequences: 37544
Number of extensions: 314531
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)