Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J06
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 59 2e-09
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 30 1.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 30 1.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 30 1.2
Z69794-5|CAA93682.1| 506|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z69789-6|CAA93652.1| 506|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 28 6.3
AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical... 28 6.3
AL110471-3|CAB63308.1| 818|Caenorhabditis elegans Hypothetical ... 27 8.3
AL034364-6|CAA22254.2| 818|Caenorhabditis elegans Hypothetical ... 27 8.3
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 59.3 bits (137), Expect = 2e-09
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 9/210 (4%)
Frame = +2
Query: 8 AQMAAFVGNHHTVATINNYIPRE--EIAYYSTIQGQQK--EPYLPPVLLDSLHKFVLGVN 175
+++AAFVG+H VA INN+I + E + G+ + E Y P L +H
Sbjct: 112 SELAAFVGHHECVAIINNHITIDVIEDLLRPKVNGKYEGAEEY-PDELAVFIHSLCGSHE 170
Query: 176 IHPVRXXXXXXXXXXXXHNADKVSKVLEMLSKKEMTRGSETNEVMAFKYHYLSYILREIH 355
IHPV+ K+ V++ + +K++ R E+NE+M+ K + + +RE
Sbjct: 171 IHPVKIIFRFSKYPDSLKYKKKILYVIDRVFEKQL-RCKESNEIMSLKLWLILFSMRETS 229
Query: 356 NIKNKQKPADKDEKKYDVVEIFSKKLLKPGKDG-VSLDLMDTFLKDCIREFPYRECTTFH 532
K EK + + KL+ ++G + +D L++ + FPY+ + H
Sbjct: 230 KFVESNK-----EKSPEEASLQYAKLISTWQEGDETRRALDVMLRNAVASFPYKH-SLLH 283
Query: 533 QMVTSLTSK----DPPTALSVINCTINGQR 610
+ K + P+A I + GQR
Sbjct: 284 DTLQKALQKSQIGERPSAYEYIVQALFGQR 313
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Frame = +2
Query: 272 KEMTRGSETNEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKD 451
+ + R E EV+ F Y Y HN K P D + KL++P
Sbjct: 1314 RALIRDKERPEVIQF-YMDDKYTATFYHNSSQKG-PIYIDSITAVPYNSYKDKLMEP--- 1368
Query: 452 GVSLDLMDTFLKDC----IREFPYRECTTFHQMVTSLTSKDPPTALSVINCTINGQRGF 616
++LDL + FLK+C ++ P Q + SLT+ ALS +C G F
Sbjct: 1369 -LALDLSNEFLKECSEDNLKNHPESVSDFCKQKIFSLTTDFNAAALS-CDCVAQGSESF 1425
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Frame = +2
Query: 272 KEMTRGSETNEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKD 451
+ + R E EV+ F Y Y HN K P D + KL++P
Sbjct: 1314 RALIRDKERPEVIQF-YMDDKYTATFYHNSSQKG-PIYIDSITAVPYNSYKDKLMEP--- 1368
Query: 452 GVSLDLMDTFLKDC----IREFPYRECTTFHQMVTSLTSKDPPTALSVINCTINGQRGF 616
++LDL + FLK+C ++ P Q + SLT+ ALS +C G F
Sbjct: 1369 -LALDLSNEFLKECSEDNLKNHPESVSDFCKQKIFSLTTDFNAAALS-CDCVAQGSESF 1425
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Frame = +2
Query: 272 KEMTRGSETNEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKD 451
+ + R E EV+ F Y Y HN K P D + KL++P
Sbjct: 1314 RALIRDKERPEVIQF-YMDDKYTATFYHNSSQKG-PIYIDSITAVPYNSYKDKLMEP--- 1368
Query: 452 GVSLDLMDTFLKDC----IREFPYRECTTFHQMVTSLTSKDPPTALSVINCTINGQRGF 616
++LDL + FLK+C ++ P Q + SLT+ ALS +C G F
Sbjct: 1369 -LALDLSNEFLKECSEDNLKNHPESVSDFCKQKIFSLTTDFNAAALS-CDCVAQGSESF 1425
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Frame = +2
Query: 272 KEMTRGSETNEVMAFKYHYLSYILREIHNIKNKQKPADKDEKKYDVVEIFSKKLLKPGKD 451
+ + R E EV+ F Y Y HN K P D + KL++P
Sbjct: 1314 RALIRDKERPEVIQF-YMDDKYTATFYHNSSQKG-PIYIDSITAVPYNSYKDKLMEP--- 1368
Query: 452 GVSLDLMDTFLKDC----IREFPYRECTTFHQMVTSLTSKDPPTALSVINCTINGQRGF 616
++LDL + FLK+C ++ P Q + SLT+ ALS +C G F
Sbjct: 1369 -LALDLSNEFLKECSEDNLKNHPESVSDFCKQKIFSLTTDFNAAALS-CDCVAQGSESF 1425
>Z69794-5|CAA93682.1| 506|Caenorhabditis elegans Hypothetical
protein F17H10.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 431 LLKPGKDGVSLDLMDTFLKDCIREFPYRE 517
L KP +D S ++ FL+DC+RE R+
Sbjct: 476 LCKPTRDSASYGVIINFLQDCLRESDKRK 504
>Z69789-6|CAA93652.1| 506|Caenorhabditis elegans Hypothetical
protein F17H10.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 431 LLKPGKDGVSLDLMDTFLKDCIREFPYRE 517
L KP +D S ++ FL+DC+RE R+
Sbjct: 476 LCKPTRDSASYGVIINFLQDCLRESDKRK 504
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 48 PPSTIIYRERKLLTIQLSR-VSKKNLTFHLSY 140
P S++ + KLLT+QL + KKN FH SY
Sbjct: 530 PISSVSGKSIKLLTLQLKETMHKKNSFFHSSY 561
>Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -2
Query: 404 HTSSHLYQQVSVYFLYYVFL*GCKISSGI*TP*LHWFHYPESSPSWITSLKLYL 243
HTSSH +V V + + + G +S G LH +P+ SPS I SL +L
Sbjct: 29 HTSSHRRTRVCVAITFGLLMFGLGVSVG---AFLHAVMFPDGSPS-ILSLPSFL 78
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 48 PPSTIIYRERKLLTIQLSR-VSKKNLTFHLSY 140
P S++ + KLLT+QL + KKN FH SY
Sbjct: 530 PISSVSGKSIKLLTLQLKETMHKKNSFFHSSY 561
>AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -2
Query: 404 HTSSHLYQQVSVYFLYYVFL*GCKISSGI*TP*LHWFHYPESSPSWITSLKLYL 243
HTSSH +V V + + + G +S G LH +P+ SPS I SL +L
Sbjct: 29 HTSSHRRTRVCVAITFGLLMFGLGVSVG---AFLHAVMFPDGSPS-ILSLPSFL 78
>AL110471-3|CAB63308.1| 818|Caenorhabditis elegans Hypothetical
protein W06D4.6 protein.
Length = 818
Score = 27.5 bits (58), Expect = 8.3
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 260 MLSKKEMTRGSETNEVMAFK-YHYLSYIL-REIHNIKNKQKPADKDEKKYDVVEIFSKKL 433
MLS + + G + F YH + IL H ++ Q DKD K + V + K+
Sbjct: 142 MLSGRSLGLGGNRRKCALFDPYHEGALILYAPEHLSEHAQLKEDKDRKVHVVADPVVGKI 201
Query: 434 LKP-GKDGVSLDLMDTFLKDCI 496
L+P +DGV F+ DC+
Sbjct: 202 LRPHQRDGVK------FMWDCV 217
>AL034364-6|CAA22254.2| 818|Caenorhabditis elegans Hypothetical
protein W06D4.6 protein.
Length = 818
Score = 27.5 bits (58), Expect = 8.3
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 260 MLSKKEMTRGSETNEVMAFK-YHYLSYIL-REIHNIKNKQKPADKDEKKYDVVEIFSKKL 433
MLS + + G + F YH + IL H ++ Q DKD K + V + K+
Sbjct: 142 MLSGRSLGLGGNRRKCALFDPYHEGALILYAPEHLSEHAQLKEDKDRKVHVVADPVVGKI 201
Query: 434 LKP-GKDGVSLDLMDTFLKDCI 496
L+P +DGV F+ DC+
Sbjct: 202 LRPHQRDGVK------FMWDCV 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,389,127
Number of Sequences: 27780
Number of extensions: 294038
Number of successful extensions: 872
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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