Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J04
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    88   1e-18
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    30   0.30 
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   2.1  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.8  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    26   5.0  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   6.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.7  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   8.7  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   8.7  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 71/214 (33%), Positives = 87/214 (40%), Gaps = 35/214 (16%)
 Frame = +2

Query: 26  DMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-------KNHLIKKDIRCKDDVYTHLYT 184
           +M     Y IMFGPD CG   + VH IF +K        + HL  +         T+LYT
Sbjct: 147 EMSNSIDYRIMFGPDKCGVNDR-VHFIFKHKNPLTGEYSEKHLDSRPASLLKPGITNLYT 205

Query: 185 LIVKPDNTYEVLIDNEKVESGELEADW--DFLPPKKIKDPE-----------------AK 307
           LIVKPD T+EV I+ + V  G L  D+    LPP +I DPE                 A 
Sbjct: 206 LIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAV 265

Query: 308 KPEDWXXXXXXXXXXXXXXX----XXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPD 475
           KP+DW                         +IPDP+A K                I NP 
Sbjct: 266 KPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPK 325

Query: 476 YK-----GVWAPKQIDNPAYKGPWIHPEIDNPEY 562
                  G W P  I NP Y+GPW  P I NPE+
Sbjct: 326 CIEGAGCGEWKPPMIRNPNYRGPWSPPMIPNPEF 359



 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 461 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSN 577
           I NP+Y+G W+P  I NP + G W   +I NP+Y  D +
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDH 378


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 110 SYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELE-ADWDFLPPKK 286
           S + K H  KK    +D  Y+H+Y +   P +   + +  ++ ES + E  + D+LP   
Sbjct: 137 STRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGIGIRVKRQEPESLKKENNNSDYLPKSA 196

Query: 287 IKDPEAKKPED 319
           +K  +   P+D
Sbjct: 197 MKQKKG-GPKD 206


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/104 (20%), Positives = 45/104 (43%)
 Frame = +2

Query: 5    EGRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYT 184
            E  ++ K++  +   ++++G       T  V +  +   KNH ++     K+ V      
Sbjct: 962  EALMNTKELADQMGLQVIYGD------TDSVMLNTNVTDKNHALRIGNEFKEKVNERYSK 1015

Query: 185  LIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPE 316
            L +  DN Y+ ++ + K +   L+ D    P   +K  + K+ E
Sbjct: 1016 LEIDIDNVYQRMLLHAKKKYAALQLDSQGKPNLDVKGLDMKRRE 1059


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 158 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPED 319
           D +Y  L +L+ +  N+YE  +    + + +    W FL      D E KK ++
Sbjct: 753 DIIYERLVSLLSRVPNSYEDTLKFSAINTLQSLLFWFFLRKDNPADEEKKKDDE 806


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 239 ESGELEADWDFLPPKKIKDPEAKKPEDW 322
           E   L+     LP  + K P AKKPED+
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDY 184


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 260 DWDFLPPKKIKDPEAKKPEDW 322
           DWD +P ++ K  EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 264 GTSYLRRRSRIQKQRNLKIGTTNPQS 341
           GTS  RRR R++K+  +KI   + +S
Sbjct: 340 GTSQFRRRERVKKRHVIKIHEASNKS 365


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 254 EADWDFLPPKKIKD 295
           E+ +D+LPPKK+ D
Sbjct: 179 ESAYDYLPPKKVSD 192


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 128 HLIKKDIRCKDDVYTHLYTLI--VKPDNTYEVLIDNEKVESGE 250
           HL      C   + T+L+ L   V P   YE L++ EK+E  E
Sbjct: 840 HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEE 882


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 128 HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE 241
           H I + +  +++ + HL TL  KPD+   ++ID E +E
Sbjct: 686 HTINQ-LSSREEAHNHLLTLRNKPDSC--LIIDGESME 720


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 482 GVWAPK-QIDNPAYKGPWIHPEIDNP 556
           G+  PK  +D  +Y G W  P+ D+P
Sbjct: 130 GLGEPKFNVDGTSYDGDWGRPQNDSP 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,878
Number of Sequences: 5004
Number of extensions: 51215
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)