Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J04
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 205 2e-53
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 198 2e-51
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 192 1e-49
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 188 3e-48
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 95 5e-20
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 89 3e-18
06_02_0225 + 13257655-13260693 29 2.2
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 29 3.8
08_02_0972 - 23187294-23188034 28 5.0
07_01_0117 + 894314-896677 28 6.7
01_05_0428 + 22060431-22060850 28 6.7
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 205 bits (501), Expect = 2e-53
Identities = 97/202 (48%), Positives = 118/202 (58%), Gaps = 1/202 (0%)
Frame = +2
Query: 8 GRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTL 187
G +DQK G+TPY IMFGPDICG TKKVH IF+ KNHLIKKD+ C+ D +H+YTL
Sbjct: 125 GDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTL 184
Query: 188 IVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXX-XXXXXXXX 364
I+ PD TY +LIDN + +SG + WD LPPK+IKDPEAKKPEDW
Sbjct: 185 IIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPE 244
Query: 365 XXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPE 544
IPDPDA K I NP+YKG W K+I NP Y+G W P
Sbjct: 245 GYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPM 304
Query: 545 IDNPEYTPDSNLYKRDEICSVG 610
IDNP++ D +Y D + +G
Sbjct: 305 IDNPDFKDDPYIYAFDSLKYIG 326
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 198 bits (484), Expect = 2e-51
Identities = 93/202 (46%), Positives = 116/202 (57%), Gaps = 1/202 (0%)
Frame = +2
Query: 8 GRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTL 187
G +DQK GETPY IMFGPDICG TKKVH I + GKNHLIKKD+ CK D TH+YTL
Sbjct: 132 GDVDQKKFGGETPYSIMFGPDICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTL 191
Query: 188 IVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXX-XXXXXXXX 364
I++PD Y +LIDN + ++G + DW+ +PPK +DPEAKKPEDW
Sbjct: 192 IIRPDAKYSILIDNTEKQTGSIYDDWNIIPPKNKRDPEAKKPEDWDDNEYIPDPEDKKPE 251
Query: 365 XXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPE 544
I DP+A+K I NP+YKG W K++ NP YKG W P
Sbjct: 252 GYDDIPKEITDPEATKPEDWDDEEDGEWTAPTIPNPEYKGPWNQKKLKNPNYKGKWKAPL 311
Query: 545 IDNPEYTPDSNLYKRDEICSVG 610
I NP+Y D +Y D + +G
Sbjct: 312 IPNPDYKDDPYIYAFDSLNHIG 333
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 192 bits (469), Expect = 1e-49
Identities = 89/193 (46%), Positives = 114/193 (59%), Gaps = 1/193 (0%)
Frame = +2
Query: 8 GRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTL 187
G ++QK G+TPY +MFGPDICG TKK+H+I SY+G+N+ IKKD++C+ D TH+YT
Sbjct: 123 GYVNQKKFSGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTF 182
Query: 188 IVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXX-XXXXXX 364
I++PD +Y +L+DN + ESG + DWD LPP+KIKD AKKP+DW
Sbjct: 183 ILRPDASYSILVDNRERESGSMYTDWDILPPRKIKDVHAKKPKDWDDREYIEDPDAVKPE 242
Query: 365 XXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPE 544
IPDP K I NP YKG W K+I NP YKG W P
Sbjct: 243 GYDSIPKEIPDPKDKKPDTWDDDDDGIWKPRMIPNPAYKGPWKRKKIKNPNYKGKWKIPW 302
Query: 545 IDNPEYTPDSNLY 583
IDNPE+ D +LY
Sbjct: 303 IDNPEFEDDPDLY 315
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 188 bits (458), Expect = 3e-48
Identities = 89/202 (44%), Positives = 115/202 (56%), Gaps = 1/202 (0%)
Frame = +2
Query: 8 GRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTL 187
G ++QK G+TPY MFGPDICG TKK+H+I SY+G+N+ IKKD++C+ D TH YT
Sbjct: 123 GYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTF 182
Query: 188 IVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXX-XXXXXX 364
I++PD +Y +L+DN + E G + DWD LPP+KIK+ AKKP+DW
Sbjct: 183 ILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVKPE 242
Query: 365 XXXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPE 544
IPDP K I NP+YKG W K+I NP YKG W P
Sbjct: 243 GYDSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPW 302
Query: 545 IDNPEYTPDSNLYKRDEICSVG 610
IDNPE+ D +LY + VG
Sbjct: 303 IDNPEFEDDPDLYVLKPLQYVG 324
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 94.7 bits (225), Expect = 5e-20
Identities = 80/231 (34%), Positives = 98/231 (42%), Gaps = 37/231 (16%)
Frame = +2
Query: 17 DQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYK----GK--NHLIKKDIRCKDDVYTHL 178
D K+ ETPY IMFGPD CG T KVH I +K GK H +K D +H+
Sbjct: 120 DAKEFDNETPYTIMFGPDKCG-STNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHV 178
Query: 179 YTLIVKPDNTYEVLIDNE-KVESGELEADWDF----LPPK-----------------KIK 292
YT I+KPDN +L+D E K ++ L AD DF +P K KI
Sbjct: 179 YTAILKPDNEVRILVDGEEKKKANFLSAD-DFEPSLIPSKTIPDPDDKKPEDWDERAKIP 237
Query: 293 DPEAKKPEDWXXXXXXXXXXXXXXX----XXXXXXHIPDPDASKXXXXXXXXXXXXXXXX 460
DP+A KP+DW I DP+A+K
Sbjct: 238 DPDAVKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPK 297
Query: 461 IDNPDYK-----GVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEI 598
IDNP + G W NPAYKG W P IDNP Y ++K EI
Sbjct: 298 IDNPKCEEAPGCGEWKRPMKQNPAYKGKWHAPLIDNPNY---KGIWKPQEI 345
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/32 (62%), Positives = 20/32 (62%)
Frame = +2
Query: 467 NPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEY 562
NP YKG W IDNP YKG W EI NPEY
Sbjct: 319 NPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEY 350
Score = 45.6 bits (103), Expect = 3e-05
Identities = 35/126 (27%), Positives = 47/126 (37%)
Frame = +2
Query: 191 VKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXX 370
VKPD+ E + E W P++I DPEA KPEDW
Sbjct: 242 VKPDDWDEDAPMEIEDEEATKPEGWLDDEPEEIDDPEANKPEDWDDEEDGEWEAPKIDNP 301
Query: 371 XXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEID 550
+ + IDNP+YKG+W P++I NP Y E+D
Sbjct: 302 KCEEAP-GCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYF------ELD 354
Query: 551 NPEYTP 568
P+ P
Sbjct: 355 KPDSDP 360
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/64 (59%), Positives = 47/64 (73%)
Frame = +2
Query: 119 GKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDP 298
G NHLIKKD+ C+ D TH+YTLI++PD Y +LIDN + +G + D D LPPKK KDP
Sbjct: 515 GNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTGSIYGDCDNLPPKKKKDP 574
Query: 299 EAKK 310
EAKK
Sbjct: 575 EAKK 578
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -1
Query: 469 VVDHRWFPLSIHLIIPIFRLTGIRVRNVLRFVPVLGFLVFRV 344
+V+ W PLS + IP L+ R+ ++RFV + FLV+RV
Sbjct: 132 LVEKPWKPLSRKVPIPPGILSPYRLLVLVRFVALFLFLVWRV 173
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 300 KQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 455
K R + T+PQS + R R L T + L+P K+ + +E H
Sbjct: 215 KSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVH 266
>08_02_0972 - 23187294-23188034
Length = 246
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 291 RIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 455
R K+RN++I +T+PQS + R R + + L+P K+ ++ H
Sbjct: 148 RPPKRRNVRI-STDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIH 201
>07_01_0117 + 894314-896677
Length = 787
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 367 LGFLVFRVGDCGFVVPIFRFLCFWILDLLR 278
LGF+ F++G C + P+F F+ + + ++R
Sbjct: 459 LGFVSFKIGQCCY-KPVFHFMLYCVRCMMR 487
>01_05_0428 + 22060431-22060850
Length = 139
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = -3
Query: 437 PSHHPNLQAYWHQG-PECAQVCP 372
P HHP A HQG P C CP
Sbjct: 6 PPHHPPCAACAHQGRPSCPAGCP 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,624
Number of Sequences: 37544
Number of extensions: 360223
Number of successful extensions: 1093
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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