Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J04
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 248 3e-66
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 248 3e-66
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical pr... 31 0.85
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 30 1.1
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 30 1.1
AF014940-10|AAK73900.1| 243|Caenorhabditis elegans Hypothetical... 29 2.0
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 29 2.6
Z81593-6|CAB04740.2| 367|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 7.9
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 7.9
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 27 7.9
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 7.9
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 27 7.9
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 7.9
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 7.9
AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical ... 27 7.9
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 248 bits (606), Expect = 3e-66
Identities = 113/198 (57%), Positives = 128/198 (64%)
Frame = +2
Query: 17 DQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVK 196
D D HGETPY +MFGPDICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+
Sbjct: 114 DLGDFHGETPYNVMFGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILN 172
Query: 197 PDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXX 376
DNTYEV ID E ++G LE DWD LP KKIKDP+AKKPEDW
Sbjct: 173 SDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWE 232
Query: 377 XXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNP 556
HIPDPDA K IDNP+YKG W PKQI NPAYKG WIHPEI+NP
Sbjct: 233 KPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENP 292
Query: 557 EYTPDSNLYKRDEICSVG 610
EYTPD LY + ++G
Sbjct: 293 EYTPDDELYSYESWGAIG 310
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 248 bits (606), Expect = 3e-66
Identities = 113/198 (57%), Positives = 128/198 (64%)
Frame = +2
Query: 17 DQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVK 196
D D HGETPY +MFGPDICGP T++VHVI +YKG+N LIKK+I CK D THLYTLI+
Sbjct: 114 DLGDFHGETPYNVMFGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILN 172
Query: 197 PDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXX 376
DNTYEV ID E ++G LE DWD LP KKIKDP+AKKPEDW
Sbjct: 173 SDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWE 232
Query: 377 XXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNP 556
HIPDPDA K IDNP+YKG W PKQI NPAYKG WIHPEI+NP
Sbjct: 233 KPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNPEYKGEWKPKQIKNPAYKGKWIHPEIENP 292
Query: 557 EYTPDSNLYKRDEICSVG 610
EYTPD LY + ++G
Sbjct: 293 EYTPDDELYSYESWGAIG 310
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 85.0 bits (201), Expect = 4e-17
Identities = 68/220 (30%), Positives = 87/220 (39%), Gaps = 38/220 (17%)
Frame = +2
Query: 17 DQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 166
D + +T Y IMFGPD CG T KVH+IF YK + + DD
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225
Query: 167 YTHLYTLIVKPDNTYEVLIDNEKVESGELEADWD--FLPPKKI----------------- 289
THL+TL+VKP Y V +D + + G + +D PPK+I
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENI 285
Query: 290 KDPEAKKPEDWXXXXXXXXXXXXXXXXXXXXXH----IPDPDASKXXXXXXXXXXXXXXX 457
+D A KP+DW I DP+A K
Sbjct: 286 EDESAVKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDEDMDGSWEAP 345
Query: 458 XIDNPDYKGV-----WAPKQIDNPAYKGPWIHPEIDNPEY 562
IDNP KG+ W I NP YKG WI P+I NP +
Sbjct: 346 LIDNPACKGLSGCGTWKAPTIKNPKYKGKWIRPKISNPAF 385
Score = 53.6 bits (123), Expect = 1e-07
Identities = 40/124 (32%), Positives = 49/124 (39%)
Frame = +2
Query: 191 VKPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXX 370
VKPD+ E + E+ DW+ + I DPEAKKP+DW
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDEDMDGSWEAP----- 345
Query: 371 XXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEID 550
+ D A K I NP YKG W +I NPA+KG W ID
Sbjct: 346 ------LIDNPACKGLSGCGTWKAPT----IKNPKYKGKWIRPKISNPAFKGKWTARLID 395
Query: 551 NPEY 562
NP Y
Sbjct: 396 NPNY 399
Score = 31.1 bits (67), Expect = 0.64
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 461 IDNPDYKGVWAPKQIDNPAYKGP 529
I NP +KG W + IDNP Y P
Sbjct: 380 ISNPAFKGKWTARLIDNPNYFEP 402
>Z83116-5|CAB05568.2| 450|Caenorhabditis elegans Hypothetical
protein M01B2.6 protein.
Length = 450
Score = 30.7 bits (66), Expect = 0.85
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 231 RRLNLVN*KPTGTSYLRRRSRIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPV 410
R + L++ K G Y+ RRS +QK NL + S T N T L TF +
Sbjct: 339 RNVTLIDGKAVGEVYMPRRSALQKGYNLSSYNYDDLSETAFIYNSTTKEYL-TFEVKRSI 397
Query: 411 SLKIGMMRWMESG 449
+ K+ ++ M G
Sbjct: 398 AAKLDYVQNMNLG 410
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 122 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 244
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 122 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 244
K I+K++ C+D THL L D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895
>AF014940-10|AAK73900.1| 243|Caenorhabditis elegans Hypothetical
protein W02D7.10 protein.
Length = 243
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 434 SHHPNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRP 321
+ +PN YW G Q+ P P V G+ L+ P
Sbjct: 168 TQYPNQTYYWSDGSASEQMVPQPEVIAPGGKALYTFDP 205
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 167 YTHLYTLIVKPDN-TYEVLIDNEKVESGELEADWDFLPP 280
+TH +TL VKP N Y+ DN+ ++ + E F P
Sbjct: 23 HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61
>Z81593-6|CAB04740.2| 367|Caenorhabditis elegans Hypothetical
protein T20B3.12 protein.
Length = 367
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 354 TRNPRTGTNLSTFRTL----MPVSLKIGMMRWMESGNHL*STTPTT 479
TR P T +ST TL +P++ K W S + ST+PT+
Sbjct: 58 TRQPICETAVSTISTLATSTLPITTKSSTTHWSTSSTPISSTSPTS 103
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Frame = -3
Query: 566 ECIQGCQSPGGSMVP-CMQGCQXXXXXXXXXXXXXXXXXVPTLH---PSHHPNLQAYWHQ 399
+CI CQ S P C+QGC + P Q +HQ
Sbjct: 785 KCISDCQGLCKSNSPQCIQGCDASCQQLCGTAPTPAVPLTVNYNCNLPCDQQCTQQCYHQ 844
Query: 398 GPECAQVCPS 369
P CA C S
Sbjct: 845 APTCAPACAS 854
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3
Query: 440 HPSHHPNLQAYWH--QGPECAQV-CPSPRV 360
HP HHP+LQ ++H Q A CPS V
Sbjct: 1620 HPPHHPHLQNHYHPPQNHTSATAPCPSAMV 1649
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3
Query: 440 HPSHHPNLQAYWH--QGPECAQV-CPSPRV 360
HP HHP+LQ ++H Q A CPS V
Sbjct: 1781 HPPHHPHLQNHYHPPQNHTSATAPCPSAMV 1810
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 425 PNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRPN 318
PN +G + CP+P C P G VC PN
Sbjct: 1121 PNFYGLTSEGCTECEPCPAPGQVCDPIDGSCVCPPN 1156
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 324 TTNPQSPTRKTRNPRTGTNLSTFRTLMP-VSLKIGMMRWMESGNHL*STTPTT 479
TT P +PT T P T T T T P + + E+ +TTPTT
Sbjct: 75 TTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTT 127
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 222 STMRRLNLVN*KPTGTSYLRRRSRIQKQRNLKIGTTNPQSPTRKTRNP 365
ST RR++L + K YL+ I+++R K Q+ + +NP
Sbjct: 100 STWRRISLASEKCVTNRYLKTDDEIEEKRARKKAKLEEQNRKEQAKNP 147
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
B0496.3a protein.
Length = 1551
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 261 TGTSYLRRRSRIQKQRNLKIGT 326
+ ++Y+RR++R ++QRN IGT
Sbjct: 1038 SASAYIRRKNRERRQRNRTIGT 1059
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
B0496.3b protein.
Length = 1592
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 261 TGTSYLRRRSRIQKQRNLKIGT 326
+ ++Y+RR++R ++QRN IGT
Sbjct: 1079 SASAYIRRKNRERRQRNRTIGT 1100
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 425 PNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRPN 318
PN +G + CP+P C P G VC PN
Sbjct: 1121 PNFYGLTSEGCTECEPCPAPGQVCDPIDGSCVCPPN 1156
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 425 PNLQAYWHQGPECAQVCPSPRVSCLPGRGLWVCRPN 318
PN +G + CP+P C P G VC PN
Sbjct: 1121 PNFYGLTSEGCTECEPCPAPGQVCDPIDGSCVCPPN 1156
>AC093703-2|AAL77187.3| 473|Caenorhabditis elegans Hypothetical
protein Y20F4.2 protein.
Length = 473
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -3
Query: 443 LHPSHHPNLQAYWHQGPECAQ-VCPSPRVSCLPGRGLWVCRPNLQVSLLLDP*SSSEVGS 267
+HP HH Q +HQ P Q P P P + Q S L P S+ GS
Sbjct: 192 MHPHHHQQQQMAFHQMPHYLQNSMPGPSGMMAPN------SQSQQHSPQLTP-QGSQQGS 244
Query: 266 PSRLLIHQIQP 234
P + + HQI P
Sbjct: 245 PVQ-MHHQIPP 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,919
Number of Sequences: 27780
Number of extensions: 296475
Number of successful extensions: 904
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -