Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J03
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    26   4.0  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.0  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.9  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 6   RQKELAERAFTIHREATKNANNLHDPEIAQYLEEKFIEDHATTIRELAGF 155
           RQK LA+    IH E+     +  D  +A  +E+     HA+T+ ++  F
Sbjct: 52  RQKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEF 101


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 51  ATKNANNLHDPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALY 215
           A  N+  L+D    Q L +KF  DH+  ++ +    + L   I+S   D S+ LY
Sbjct: 147 AMDNSLRLYDAHTGQLLTQKF--DHSHYVQGVC--WDPLNQYIVSESSDRSICLY 197


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 493 VRFTLERERRDAAIERVPVLTLHSKCTPHM*AWRLQTDVAA 371
           +R T+ER+     +E      L + C P +  W+   D+A+
Sbjct: 426 IRATIERDGITERLEEAGATVLANACGPCIGMWKRTDDIAS 466


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = -3

Query: 540 SVEGHATDEGATGAPSSGLL---SREN-GGMRQSNVYPSSRSILNVPHICELGACRLTWL 373
           +V+  + +   T  P S  L   S +N GG +   +YPS+  + NV +  E  A  L+ +
Sbjct: 455 TVQNASWNAQGTDLPLSNYLPESSEQNRGGNKHLELYPSTAEVSNVRN-DESKANSLSEI 513

Query: 372 LYWKAGACRAS 340
            Y +   CR+S
Sbjct: 514 SYNQQSECRSS 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,900
Number of Sequences: 5004
Number of extensions: 48269
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)