Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J03
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418... 56 2e-08
11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895... 39 0.004
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 33 0.19
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 31 0.58
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 30 1.3
06_01_1059 + 8512335-8513444 30 1.3
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 30 1.3
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 29 2.3
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 29 2.3
08_02_1095 - 24278295-24278741,24279066-24279307,24279647-242797... 29 2.3
08_01_0688 - 6072815-6073918 29 2.3
03_02_1028 - 13444284-13445381 29 4.1
06_02_0027 - 10750322-10750585,10750992-10750997 28 5.4
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 28 7.1
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 28 7.1
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 7.1
01_06_0785 - 31985455-31988463 28 7.1
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 7.1
10_08_0500 - 18357828-18358649 27 9.4
09_04_0457 - 17736158-17737336 27 9.4
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 27 9.4
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 27 9.4
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 27 9.4
08_01_0310 + 2714773-2715309,2716426-2716650 27 9.4
07_03_0439 + 18212584-18213065,18214164-18215010 27 9.4
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 27 9.4
02_02_0672 - 12814610-12815703,12815743-12816226 27 9.4
01_01_0421 + 3181139-3184207 27 9.4
>05_01_0501 -
4184932-4185048,4185360-4185456,4185537-4185709,
4186225-4186305,4186959-4187072,4187177-4187497
Length = 300
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWGTFRMER 433
L RHW + +G E + G GVVG++PV+ F+YSS L P+ M G F M+
Sbjct: 212 LLRRHWIVTDANGRTENIWGVGVVGEQPVIFPRT-GFEYSSACPLNTPNGRMEGDFEMKH 270
Query: 434 ED---GYTFDCRIPPFSLESKPDE 496
D TF+ I PFSL D+
Sbjct: 271 IDKAGSSTFNVAIAPFSLSILGDD 294
>11_03_0013 -
8957277-8957355,8957485-8957591,8957700-8957915,
8958191-8958907,8959483-8959656,8960292-8960546
Length = 515
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWGTF---- 421
L RHW I + V G GV+G+ P+L F Y S L + G+F
Sbjct: 429 LYSRHWIIRWRDRVVSDVNGEGVIGKYPLLTTGQEEFVYESCTPLPDSPGSVEGSFTFVP 488
Query: 422 -RMEREDGYTFDCRIPPFSLE 481
++ R +G F+ + F LE
Sbjct: 489 GKLSRPEGKPFEVTVAAFPLE 509
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +3
Query: 225 DLLEVLAAEGSANATGGYSL*AVRWRRCGAAASSGRSPCWRGTHPP---SSTAATSVCRR 395
D AA G + GG S RWR AA +GR+ R + PP ++T + +
Sbjct: 346 DAAVAAAASGRSGGGGGRS----RWRASAAAKQAGRAAVSRSSAPPKKYNATRCSVLFDS 401
Query: 396 QAHICGVHLEWSVRTGT 446
AH WS+R T
Sbjct: 402 VAHADPAARPWSIRMPT 418
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 31.5 bits (68), Expect = 0.58
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = -2
Query: 346 RQHGLLPDDAAAPHRLQR--TAQREYPPVAFAEPSAASTSRRSSKMYRARDKSLSLLIIT 173
RQ G + R QR TA+R PP P T RSS A+ S S +++
Sbjct: 25 RQMGCMAGIFQIFDRRQRLLTARRRRPPPKMLPPGPGHTLPRSSSNVAAQSSSTSKIVLE 84
Query: 172 PLRSFVKPANSRIVVA*SSMNFSSRYCA 89
S NS + + S + SS C+
Sbjct: 85 KTFSKSMTENSSLSIESSRASCSSSSCS 112
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 137 PRISRFHKRPQRCYYKQ-R*GLISRSVHFRRPSGGTRGRGLRER 265
P I + HK+ +R KQ R L+ S F P G T GR LR+R
Sbjct: 389 PDIEKIHKKKERLLKKQQREALLIDS--FLAPDGFTTGRSLRDR 430
>06_01_1059 + 8512335-8513444
Length = 369
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 368 YSSHVSLQAPSSHMWGTFRMEREDG 442
++SH LQ P+S W FRM R DG
Sbjct: 100 FASH-QLQGPASEWWDHFRMNRADG 123
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2
Query: 151 PANSRIVVA*SSMNFSSRYCAISGSCRLLAFFVASR*MVKARSANSFC 8
P NSR V+ S+ FSS IS A+F ASR + +SFC
Sbjct: 326 PQNSRFVLDYSNNRFSSIPTNISTQLGYTAYFKASRNNLSGEIPSSFC 373
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/38 (23%), Positives = 24/38 (63%)
Frame = +3
Query: 63 ANNLHDPEIAQYLEEKFIEDHATTIRELAGFTNDLKGV 176
A+ +DP++ ++E +F+E+ I++++ + L+ V
Sbjct: 200 ASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRV 237
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/38 (23%), Positives = 24/38 (63%)
Frame = +3
Query: 63 ANNLHDPEIAQYLEEKFIEDHATTIRELAGFTNDLKGV 176
A+ +DP++ ++E +F+E+ I++++ + L+ V
Sbjct: 226 ASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRV 263
>08_02_1095 -
24278295-24278741,24279066-24279307,24279647-24279731,
24279783-24280004
Length = 331
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 177 IISNDKDLSLALYIFDDLLEVLAAEGSANATGGYSL*AVRWRRCGAAASSGRSPCWRGT 353
+++ DK+ LA + D+ + +A G A+ G + + WR G + CW T
Sbjct: 139 LLNADKETVLAFDVDDETITSIALPGERVASRGRTSNRISWRCPGRRCAFRNDWCWPAT 197
>08_01_0688 - 6072815-6073918
Length = 367
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 368 YSSHVSLQAPSSHMWGTFRMEREDGY 445
++SH LQ P+S W FRM R +G+
Sbjct: 100 FASH-QLQGPASEWWDHFRMNRAEGH 124
>03_02_1028 - 13444284-13445381
Length = 365
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 368 YSSHVSLQAPSSHMWGTFRMEREDG 442
++SH LQ P+S W FRM R +G
Sbjct: 100 FTSH-QLQGPASEWWDHFRMNRAEG 123
>06_02_0027 - 10750322-10750585,10750992-10750997
Length = 89
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 373 AVLEGGCVPRQHGLLPDDAAAPHRLQRTAQREYPPVAFAEPSAASTSRRSS 221
AV G V H + A APHR ++ + PP+ PSA T+ R +
Sbjct: 23 AVFSGRTVVGNHSAVTGAAPAPHRKEQYSAAYRPPM--PSPSAPPTADREA 71
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 432 RSILNVPHICELGACRLTWLLYWKAGACRASTGSCPTTPRPRTV 301
R ++ +PHI + C W L+ A A S + P TP P V
Sbjct: 10 RRLIAMPHIVVVVLC---WFLHAPAAAATLSDLAVPATPAPAPV 50
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 233 GGTRGRGLRERHWRIFSLSGTLETVRGRGV 322
G T GL+ R R +++GTL +R RGV
Sbjct: 33 GPTGNTGLKRRKGRGLTINGTLAKLRARGV 62
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 233 GGTRGRGLRERHWRIFSLSGTLETVRGRGV 322
G T GL+ R R +++GTL +R RGV
Sbjct: 75 GPTGNTGLKRRKGRGLTINGTLAKLRARGV 104
>01_06_0785 - 31985455-31988463
Length = 1002
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 337 GLLPDDAAAPHRLQRTAQREYPPVAFAEPSAAST 236
GLLP DA+ P + ++ + P + + PS ST
Sbjct: 86 GLLPSDASPPPSICTSSNFDTPAIVYNNPSFIST 119
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 245 GRGLRERHWRIFSLSGTLETVRGRGVVGQEPVLARH 352
GRG RE + I + SGT + ++ G + EPVL H
Sbjct: 1045 GRGFRELGFNIIATSGTAKVLQLEG-IPVEPVLKIH 1079
>10_08_0500 - 18357828-18358649
Length = 273
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 219 FDDLL-EVLAAEGSANATGGYSL*AVRWRRCGAAAS 323
F DLL ++L A +A GGYS+ W++ A A+
Sbjct: 190 FPDLLRQMLMAPATAGGGGGYSIDLTAWQQMAAFAA 225
>09_04_0457 - 17736158-17737336
Length = 392
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 385 TDVAAVLEGGCVPRQHGLLPDDAAAP 308
+DVAA L PR G P +AAAP
Sbjct: 179 SDVAAELPTAPAPRPEGATPSEAAAP 204
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 309 GAAASSGRSPCWRGTHPPSSTAATSVCRRQAHICG 413
GA SS P RG+ PP STA S R G
Sbjct: 15 GAVYSSEFDPSSRGSSPPCSTAPPSTSHRPPAAAG 49
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 359 AFQYSSHVSLQAPSSHMWGTFRMEREDGYTFDC 457
A Y V L++PSS++W R+D + C
Sbjct: 837 AIPYVEEVGLRSPSSNLWLRLPFARDDSWKHIC 869
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 393 ACRLTWLLYWKAGACRASTGSCPTTPRPRTVSSV 292
+CR W+A AC + G+ PRP + S V
Sbjct: 35 SCRSCGRGRWRAPACSPAAGATSGPPRPASTSGV 68
>08_01_0310 + 2714773-2715309,2716426-2716650
Length = 253
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 368 YSSHVSLQAPSSHMWGTFRMEREDG 442
++SH LQ P+S W FRM + +G
Sbjct: 100 FASH-QLQGPTSEWWDHFRMNKAEG 123
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 303 RCGAAASSGRSPCWRGTHPPSSTAA 377
R AAASS SP T+PPS+T+A
Sbjct: 42 RGAAAASSPTSPRAASTNPPSATSA 66
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 96 YLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDDLLEVLAAEGS 257
Y I + + LAG T D+ + ++L LA + DD+L+ S
Sbjct: 274 YKTASLISNSCKAVAILAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSAS 327
>02_02_0672 - 12814610-12815703,12815743-12816226
Length = 525
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 191 IVAYNNTFEVVCETG*FADCRGVIFDELLLKVLCDLRIVQIIGVLRSLTVNGEGAFCQLL 12
+VAYN +CE G + ++ D + + + R I+ +RSL V G+ + + L
Sbjct: 323 VVAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPNTRTFNIL--IRSLCVGGKSSLAKSL 380
Query: 11 L 9
+
Sbjct: 381 I 381
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -2
Query: 151 PANSRIVVA*SSMNFSSRYCAISGSCRLLAFFVASR*MVKARSANSFC 8
P NS V+ S+ FSS IS R A+F ASR + SFC
Sbjct: 608 PQNSGTVLDYSNNRFSSIPPNISTQLRDTAYFKASRNNISGDIPTSFC 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,533
Number of Sequences: 37544
Number of extensions: 397839
Number of successful extensions: 1523
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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