Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J03
(635 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directe... 145 1e-34
BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directe... 145 1e-34
AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase... 145 1e-34
BC046110-1|AAH46110.1| 471|Homo sapiens F-box protein 3 protein. 43 8e-04
BC039291-1|AAH39291.1| 158|Homo sapiens FBXO3 protein protein. 43 8e-04
AK001943-1|BAA91991.1| 471|Homo sapiens protein ( Homo sapiens ... 43 8e-04
AF176702-1|AAF03702.1| 410|Homo sapiens F-box protein FBX3 prot... 43 8e-04
AB209039-1|BAD92276.1| 446|Homo sapiens F-box only protein 3 is... 43 8e-04
AL136625-1|CAB66560.1| 471|Homo sapiens hypothetical protein pr... 42 0.002
BC100770-1|AAI00771.1| 183|Homo sapiens ferritin, heavy polypep... 38 0.023
BC100769-1|AAI00770.1| 183|Homo sapiens ferritin, heavy polypep... 38 0.023
BC100768-1|AAI00769.1| 183|Homo sapiens ferritin, heavy polypep... 38 0.023
BC069538-1|AAH69538.2| 183|Homo sapiens ferritin, heavy polypep... 38 0.023
BC069069-1|AAH69069.2| 183|Homo sapiens ferritin, heavy polypep... 38 0.023
AF285592-1|AAK31971.1| 183|Homo sapiens ferritin heavy polypept... 38 0.023
BC011206-1|AAH11206.1| 253|Homo sapiens tetraspanin 3 protein. 31 4.5
BC009248-1|AAH09248.1| 253|Homo sapiens tetraspanin 3 protein. 31 4.5
BC004280-1|AAH04280.1| 253|Homo sapiens tetraspanin 3 protein. 31 4.5
BC000704-1|AAH00704.1| 252|Homo sapiens tetraspanin 3 protein. 31 4.5
AK001326-1|BAA91627.1| 253|Homo sapiens protein ( Homo sapiens ... 31 4.5
AK001310-1|BAA91615.1| 253|Homo sapiens protein ( Homo sapiens ... 31 4.5
AK001305-1|BAA91613.1| 253|Homo sapiens protein ( Homo sapiens ... 31 4.5
AF133423-1|AAF08362.1| 253|Homo sapiens tetraspanin TM4-A protein. 31 4.5
AF054840-1|AAC69716.1| 253|Homo sapiens tetraspan TM4SF protein. 31 4.5
AK097480-1|BAC05071.1| 222|Homo sapiens protein ( Homo sapiens ... 30 6.0
AB075861-1|BAB85567.1| 863|Homo sapiens KIAA1981 protein protein. 30 6.0
BC034419-1|AAH34419.1| 242|Homo sapiens ferritin mitochondrial ... 30 7.9
>BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 145 bits (352), Expect = 1e-34
Identities = 67/81 (82%), Positives = 70/81 (86%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWGTFRMER 433
LRERHWRIFSLSGTLETVRGRGVVG+EPVL++ PAFQYSSHVSLQA S HMWGTFR ER
Sbjct: 279 LRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFER 338
Query: 434 EDGYTFDCRIPPFSLESKPDE 496
DG FD RIPPFSLES DE
Sbjct: 339 PDGSHFDVRIPPFSLESNKDE 359
>BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 145 bits (352), Expect = 1e-34
Identities = 67/81 (82%), Positives = 70/81 (86%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWGTFRMER 433
LRERHWRIFSLSGTLETVRGRGVVG+EPVL++ PAFQYSSHVSLQA S HMWGTFR ER
Sbjct: 279 LRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFER 338
Query: 434 EDGYTFDCRIPPFSLESKPDE 496
DG FD RIPPFSLES DE
Sbjct: 339 PDGSHFDVRIPPFSLESNKDE 359
>AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase
delta p38 subunit protein.
Length = 368
Score = 145 bits (352), Expect = 1e-34
Identities = 67/81 (82%), Positives = 70/81 (86%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWGTFRMER 433
LRERHWRIFSLSGTLETVRGRGVVG+EPVL++ PAFQYSSHVSLQA S HMWGTFR ER
Sbjct: 279 LRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFER 338
Query: 434 EDGYTFDCRIPPFSLESKPDE 496
DG FD RIPPFSLES DE
Sbjct: 339 PDGSHFDVRIPPFSLESNKDE 359
>BC046110-1|AAH46110.1| 471|Homo sapiens F-box protein 3 protein.
Length = 471
Score = 43.2 bits (97), Expect = 8e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWG--TFRM 427
L R+WRI + G +E V+G GVVG+ P+++ ++Y+S + S +M G TF
Sbjct: 326 LDSRYWRITNAKGDVEEVQGPGVVGEFPIIS-PGRVYEYTSCTTFSTTSGYMEGYYTFHF 384
Query: 428 EREDGYTFDCRIPPFSL 478
F+ IP F +
Sbjct: 385 LYFKDKIFNVAIPRFHM 401
>BC039291-1|AAH39291.1| 158|Homo sapiens FBXO3 protein protein.
Length = 158
Score = 43.2 bits (97), Expect = 8e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWG--TFRM 427
L R+WRI + G +E V+G GVVG+ P+++ ++Y+S + S +M G TF
Sbjct: 13 LDSRYWRITNAKGDVEEVQGPGVVGEFPIIS-PGRVYEYTSCTTFSTTSGYMEGYYTFHF 71
Query: 428 EREDGYTFDCRIPPFSL 478
F+ IP F +
Sbjct: 72 LYFKDKIFNVAIPRFHM 88
>AK001943-1|BAA91991.1| 471|Homo sapiens protein ( Homo sapiens
cDNA FLJ11081 fis, clone PLACE1005187, weakly similar to
APAG PROTEIN. ).
Length = 471
Score = 43.2 bits (97), Expect = 8e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWG--TFRM 427
L R+WRI + G +E V+G GVVG+ P+++ ++Y+S + S +M G TF
Sbjct: 326 LDSRYWRITNAKGDVEEVQGPGVVGEFPIIS-PGRVYEYTSCTTFSTTSGYMEGYYTFHF 384
Query: 428 EREDGYTFDCRIPPFSL 478
F+ IP F +
Sbjct: 385 LYFKDKIFNVAIPRFHM 401
>AF176702-1|AAF03702.1| 410|Homo sapiens F-box protein FBX3
protein.
Length = 410
Score = 43.2 bits (97), Expect = 8e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWG--TFRM 427
L R+WRI + G +E V+G GVVG+ P+++ ++Y+S + S +M G TF
Sbjct: 321 LDSRYWRITNAKGDVEEVQGPGVVGEFPIIS-PGRVYEYTSCTTFSTTSGYMEGYYTFHF 379
Query: 428 EREDGYTFDCRIPPFSL 478
F+ IP F +
Sbjct: 380 LYFKDKIFNVAIPRFHM 396
>AB209039-1|BAD92276.1| 446|Homo sapiens F-box only protein 3
isoform 1 variant protein.
Length = 446
Score = 43.2 bits (97), Expect = 8e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHMWG--TFRM 427
L R+WRI + G +E V+G GVVG+ P+++ ++Y+S + S +M G TF
Sbjct: 301 LDSRYWRITNAKGDVEEVQGPGVVGEFPIIS-PGRVYEYTSCTTFSTTSGYMEGYYTFHF 359
Query: 428 EREDGYTFDCRIPPFSL 478
F+ IP F +
Sbjct: 360 LYFKDKIFNVAIPRFHM 376
>AL136625-1|CAB66560.1| 471|Homo sapiens hypothetical protein
protein.
Length = 471
Score = 41.5 bits (93), Expect = 0.002
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQAPSSHM--WGTFRM 427
L R+WRI + G +E V+G GVVG+ P+++ ++Y+S + S +M + TF
Sbjct: 326 LDSRYWRITNAKGDVEEVQGPGVVGEFPIIS-PGRVYEYTSCTTFSTTSGYMEEYYTFHF 384
Query: 428 EREDGYTFDCRIPPFSL 478
F+ IP F +
Sbjct: 385 LYFKDKIFNVAIPRFHM 401
>BC100770-1|AAI00771.1| 183|Homo sapiens ferritin, heavy
polypeptide-like 17 protein.
Length = 183
Score = 38.3 bits (85), Expect = 0.023
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 78 DPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDDL 230
DP++ +LE ++ + TI+EL G+ ++L+ + + LA Y+FD L
Sbjct: 127 DPQLCHFLESHYLHEQVKTIKELGGYVSNLRKIC---SPEAGLAEYLFDKL 174
>BC100769-1|AAI00770.1| 183|Homo sapiens ferritin, heavy
polypeptide-like 17 protein.
Length = 183
Score = 38.3 bits (85), Expect = 0.023
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 78 DPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDDL 230
DP++ +LE ++ + TI+EL G+ ++L+ + + LA Y+FD L
Sbjct: 127 DPQLCHFLESHYLHEQVKTIKELGGYVSNLRKIC---SPEAGLAEYLFDKL 174
>BC100768-1|AAI00769.1| 183|Homo sapiens ferritin, heavy
polypeptide-like 17 protein.
Length = 183
Score = 38.3 bits (85), Expect = 0.023
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 78 DPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDDL 230
DP++ +LE ++ + TI+EL G+ ++L+ + + LA Y+FD L
Sbjct: 127 DPQLCHFLESHYLHEQVKTIKELGGYVSNLRKIC---SPEAGLAEYLFDKL 174
>BC069538-1|AAH69538.2| 183|Homo sapiens ferritin, heavy
polypeptide-like 17 protein.
Length = 183
Score = 38.3 bits (85), Expect = 0.023
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 78 DPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDDL 230
DP++ +LE ++ + TI+EL G+ ++L+ + + LA Y+FD L
Sbjct: 127 DPQLCHFLESHYLHEQVKTIKELGGYVSNLRKIC---SPEAGLAEYLFDKL 174
>BC069069-1|AAH69069.2| 183|Homo sapiens ferritin, heavy
polypeptide-like 17 protein.
Length = 183
Score = 38.3 bits (85), Expect = 0.023
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 78 DPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDDL 230
DP++ +LE ++ + TI+EL G+ ++L+ + + LA Y+FD L
Sbjct: 127 DPQLCHFLESHYLHEQVKTIKELGGYVSNLRKIC---SPEAGLAEYLFDKL 174
>AF285592-1|AAK31971.1| 183|Homo sapiens ferritin heavy
polypeptide-like 17 protein.
Length = 183
Score = 38.3 bits (85), Expect = 0.023
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 78 DPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDDL 230
DP++ +LE ++ + TI+EL G+ ++L+ + + LA Y+FD L
Sbjct: 127 DPQLCHFLESHYLHEQVKTIKELGGYVSNLRKIC---SPEAGLAEYLFDKL 174
>BC011206-1|AAH11206.1| 253|Homo sapiens tetraspanin 3 protein.
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>BC009248-1|AAH09248.1| 253|Homo sapiens tetraspanin 3 protein.
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>BC004280-1|AAH04280.1| 253|Homo sapiens tetraspanin 3 protein.
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>BC000704-1|AAH00704.1| 252|Homo sapiens tetraspanin 3 protein.
Length = 252
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 125 YNGTNPDAASRAIDYVQRQLHCCGIH 150
>AK001326-1|BAA91627.1| 253|Homo sapiens protein ( Homo sapiens
cDNA FLJ10464 fis, clone NT2RP1001546, weakly similar to
PLATELET-ENDOTHELIAL TETRASPAN ANTIGEN 3. ).
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>AK001310-1|BAA91615.1| 253|Homo sapiens protein ( Homo sapiens
cDNA FLJ10448 fis, clone NT2RP1000856, weakly similar to
PLATELET-ENDOTHELIAL TETRASPAN ANTIGEN 3. ).
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>AK001305-1|BAA91613.1| 253|Homo sapiens protein ( Homo sapiens
cDNA FLJ10443 fis, clone NT2RP1000782, weakly similar to
PLATELET-ENDOTHELIAL TETRASPAN ANTIGEN 3. ).
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>AF133423-1|AAF08362.1| 253|Homo sapiens tetraspanin TM4-A protein.
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>AF054840-1|AAC69716.1| 253|Homo sapiens tetraspan TM4SF protein.
Length = 253
Score = 30.7 bits (66), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 342 WRGTHPPSSTAATSVCRRQAHICGVH 419
+ GT+P +++ A +RQ H CG+H
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIH 151
>AK097480-1|BAC05071.1| 222|Homo sapiens protein ( Homo sapiens
cDNA FLJ40161 fis, clone TESTI2015710. ).
Length = 222
Score = 30.3 bits (65), Expect = 6.0
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 297 WRRCGAAASSGRSPCWRGT-HPPSSTAATSVCRRQA 401
W C S+ CW T PP++T CRR+A
Sbjct: 113 WGPCPCCGSTRSGKCWLVTASPPAATTGRLTCRRRA 148
>AB075861-1|BAB85567.1| 863|Homo sapiens KIAA1981 protein protein.
Length = 863
Score = 30.3 bits (65), Expect = 6.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 340 HGLLPDDAAAPHRLQRTAQREYPPVAFAEPSAASTSRRSS 221
+G L D H LQ AQR PP A E + S ++S
Sbjct: 244 YGALAGDKLILHLLQEAAQRPSPPSALTEDDSGEASSQNS 283
>BC034419-1|AAH34419.1| 242|Homo sapiens ferritin mitochondrial
protein.
Length = 242
Score = 29.9 bits (64), Expect = 7.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 63 ANNLHDPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFD 224
A++ DP + +LE ++ + +I+EL ++L + D LA Y+FD
Sbjct: 181 ASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNL---VKMGAPDAGLAEYLFD 231
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,888,287
Number of Sequences: 237096
Number of extensions: 1905667
Number of successful extensions: 5483
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5465
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -