Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J03
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily ass...    73   2e-13
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF002197-4|AAD34659.1|  393|Caenorhabditis elegans Hypothetical ...    27   8.5  

>L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 307 protein.
          Length = 342

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +2

Query: 254 LRERHWRIFSLSGTLETVRGRGVVGQEPVLARHAPAFQYSSHVSLQ-APSSHMWGTFRME 430
           LRER  +++SL+  +  + G GVVG++P L    PAFQ+SS + L+     HMWG F+ME
Sbjct: 251 LRERTLKVYSLNN-MNQMHGHGVVGKQPELNAATPAFQFSSTLELKHTKGGHMWGRFKME 309

Query: 431 REDGYTFDCRIPPFSLES 484
           RE+G  FD  IP    ES
Sbjct: 310 RENGVLFDVHIPTIVFES 327


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical protein
            F46C5.6 protein.
          Length = 986

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
 Frame = -2

Query: 472  ERRDAAIERV-PVLTLHSKCTPHM*AWRLQTDVAAVLEGGCVPRQHGLLPDDAAAPHR-- 302
            ER+  A+ R  PV+T+ S+ +P   ++R  +   A  E    P +   LP  +AA  R  
Sbjct: 812  ERKAIAVVRPQPVITVRSQ-SPSPMSYRSPSP--APKESAIRPSR---LPLSSAAKERDK 865

Query: 301  LQRTAQREYPPVAFAEPSAAST-SRRSSKMYRARDKSLSLLIITPLRSFVKPAN 143
            L++TA    PP A +  SA+   SRRS  M  +     S    +PL S   P++
Sbjct: 866  LRKTATDAPPPPARSARSASVVASRRSDAMTSSTSSISSNSFTSPLSSSSLPSS 919


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 FIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIF 221
           F+ED    + E  GF ND    +I+ D  + +A  +F
Sbjct: 35  FVEDSHRELGEFKGFANDAWNSMINQDDSVRMARSVF 71


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 FIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIF 221
           F+ED    + E  GF ND    +I+ D  + +A  +F
Sbjct: 35  FVEDSHRELGEFKGFANDAWNSMINQDDSVRMARSVF 71


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical protein
            F46C5.6 protein.
          Length = 986

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
 Frame = -2

Query: 472  ERRDAAIERV-PVLTLHSKCTPHM*AWRLQTDVAAVLEGGCVPRQHGLLPDDAAAPHR-- 302
            ER+  A+ R  PV+T+ S+ +P   ++R  +   A  E    P +   LP  +AA  R  
Sbjct: 812  ERKAIAVVRPQPVITVRSQ-SPSPMSYRSPSP--APKESAIRPSR---LPLSSAAKERDK 865

Query: 301  LQRTAQREYPPVAFAEPSAAST-SRRSSKMYRARDKSLSLLIITPLRSFVKPAN 143
            L++TA    PP A +  SA+   SRRS  M  +     S    +PL S   P++
Sbjct: 866  LRKTATDAPPPPARSARSASVVASRRSDAMTSSTSSISSNSFTSPLSSSSLPSS 919


>Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical
           protein F14H3.2 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 474 ENGGMRQSNVYPSSRSILNVPH 409
           E GG R S+VYP  R+  N PH
Sbjct: 415 EGGGFRNSDVYPKQRA--NYPH 434


>AF002197-4|AAD34659.1|  393|Caenorhabditis elegans Hypothetical
           protein F20H11.6 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/34 (29%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 36  TIHREATKN-ANNLHDPEIAQYLEEKFIEDHATT 134
           +IH +A ++ +NN H P ++Q+ +E   + H+++
Sbjct: 30  SIHDDAGQSFSNNTHTPSVSQFFDETSNDSHSSS 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,585
Number of Sequences: 27780
Number of extensions: 292670
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)