Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J02
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    46   3e-06
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    26   3.6  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
 Frame = -1

Query: 590 RIPQRYVIGTST-KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXKQGEDIFATKKEKYVP 414
           R+  RYVI TS  K+D+    +      AYF              + E  FA    K   
Sbjct: 95  RVNHRYVIATSAPKIDVSGVSVEK-FTKAYFAKQKRSGPVK----KDEAFFAENAPKNAL 149

Query: 413 SEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 267
             +R ADQK VD  ++ AI+  P+ K    YL ASF L +   PH ++F
Sbjct: 150 PAERIADQKAVDAKLLPAIKAIPNMKE---YLAASFALSNGDRPHLMKF 195


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 264 LEAQTVRELTRSEPERGPEVTAECLLVGPESDRLY 368
           LE + + EL R  PER P+   + +++    DR+Y
Sbjct: 139 LETKRLFELARYLPERYPKADKKDIIIKNPGDRVY 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,987
Number of Sequences: 5004
Number of extensions: 21636
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)