Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J02
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    65   5e-11
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    55   5e-08
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226...    27   8.5  

>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 47/110 (42%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = -1

Query: 590 RIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXKQGEDIFATKKE--KYV 417
           R+ Q YVI TSTKVD+    +    DD YF              +GE +F T+KE  K +
Sbjct: 142 RVNQPYVIATSTKVDISGVNVEK-FDDKYFSRDKKQKAKKT---EGE-LFETEKEATKNL 196

Query: 416 PSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFPHRLRF 267
           P E +K DQK+VD  +IKAI   PD KT   YL A F LR    PH + F
Sbjct: 197 P-EFKKEDQKVVDAELIKAIEAVPDLKT---YLGARFSLRDGDKPHEMVF 242


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
 Frame = -1

Query: 590 RIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXKQGEDIFATKKE--KYV 417
           R+ Q YVI TSTKVD+   K+    DD YF              +GE +F T+KE  K +
Sbjct: 119 RVNQAYVIATSTKVDISGVKVDK-FDDKYFARDKKAKAKKT---EGE-LFETEKEATKNL 173

Query: 416 PSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFP 282
           P + +K DQK VD  +IKAI + PD   L+ YL    G R+S++P
Sbjct: 174 P-DFKKDDQKAVDAELIKAIEVVPD---LKSYL----GARNSRWP 210


>02_05_0902 +
           32620668-32621209,32621847-32622258,32622471-32622675,
           32622712-32622806,32622945-32623557,32623652-32623820,
           32624392-32624749,32625226-32625336,32626207-32626561,
           32627262-32627484,32627837-32628058,32628628-32628781
          Length = 1152

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 443 FATKKEKYVPSEQRKADQKLVDEAVI----KAIRLRPDKKTLRGYLRASFGLRSS 291
           FA  ++K   ++ +KA +    E  I    KA+ L PD + L  YL  ++G R S
Sbjct: 314 FARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLYLLKAYGERDS 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531,884
Number of Sequences: 37544
Number of extensions: 151797
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)