Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J01
(305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 95 3e-21
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 89 2e-19
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 27 0.47
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 1.1
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 25 1.9
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 2.5
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 24 4.4
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 24 5.8
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 23 7.7
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 94.7 bits (225), Expect = 3e-21
Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = +3
Query: 39 MPREINDIKDFLLKARRKDAKSVKIKKNP-ENVKFNVRCSRFLYTLVITDKEKAEKLKQS 215
MPR+I+DIK FL ARRKDA S +IKKN ++VKF +RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 216 LPPGLQVKEV 245
LPP L V EV
Sbjct: 61 LPPDLTVTEV 70
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 88.6 bits (210), Expect = 2e-19
Identities = 43/70 (61%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +3
Query: 39 MPREINDIKDFLLKARRKDAKSVKIKKNPEN-VKFNVRCSRFLYTLVITDKEKAEKLKQS 215
MPR++ DIK FL A R DA S ++KKN VKF +RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 216 LPPGLQVKEV 245
LPP L V EV
Sbjct: 61 LPPALTVTEV 70
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 0.47
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 155 SVPVHPRHHGQGEGRETETEFTSRSPG*GSE 247
+V H + HG+G GR E F +R+PG SE
Sbjct: 181 AVESHSKFHGKGNGR-VEIWFGARTPGGVSE 210
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 97 ASFLRAFNKKSLISLISRGMMKCVMSPSC 11
+S L KK +++ SRG++ V SP C
Sbjct: 491 SSMLTTSCKKEILAAASRGLLNSVTSPVC 519
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 25.4 bits (53), Expect = 1.9
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +3
Query: 69 FLLKARRKDAKSVKIK-----KNPENVKFNVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 233
F+ K R+ KSVKIK K P+ +K N + + TDK K K +
Sbjct: 891 FIEKGRKNQVKSVKIKGMTIIKAPDALK-NANLHNEVIVMQTTDKPIVLKAKSKKIHNIW 949
Query: 234 VKEVK 248
V+ +K
Sbjct: 950 VQAIK 954
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 2.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 39 MPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVRCSR 158
+ RE ++ LKA RK+A+ V+ + P K+ + SR
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSR 472
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 24.2 bits (50), Expect = 4.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 205 SFSAFSLSVMTRVY-----RNREQRTLNXXXXXXXXXFTDLASFLRAFNKKSLIS 56
++S++ V+ +V+ N+ R LN AS L A+NKKS IS
Sbjct: 36 TYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 23.8 bits (49), Expect = 5.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 92 FPTRFQQKIFDIIDFTRHDEVCNVAIVPNS 3
+PTR IFD + F H NVAIV S
Sbjct: 491 YPTRPSASIFDNLSFDIHPGT-NVAIVAPS 519
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 269 LINPSHSLHFLNLE 228
LINPSHS+ F N +
Sbjct: 1187 LINPSHSVIFFNTD 1200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 997,523
Number of Sequences: 5004
Number of extensions: 15436
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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