Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J01
(305 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26876-1|CAA81488.1| 70|Homo sapiens ribosomal protein protein. 126 1e-29
BC000603-1|AAH00603.1| 70|Homo sapiens ribosomal protein L38 p... 126 1e-29
AB007185-1|BAA25844.1| 37|Homo sapiens ribosomal protein L38 p... 72 3e-13
U26914-1|AAB19094.1| 755|Homo sapiens ras-responsive element bi... 27 8.1
BC131599-1|AAI31600.1| 478|Homo sapiens RREB1 protein protein. 27 8.1
AL589644-1|CAI14574.1| 1723|Homo sapiens ras responsive element ... 27 8.1
AL355336-1|CAH73521.1| 1723|Homo sapiens ras responsive element ... 27 8.1
AL139095-6|CAI16450.1| 1723|Homo sapiens ras responsive element ... 27 8.1
AB019351-1|BAD32778.1| 1687|Homo sapiens zinc-finger motif-enhan... 27 8.1
AB019254-1|BAD32776.1| 1742|Homo sapiens zinc-finger motif-enhan... 27 8.1
>Z26876-1|CAA81488.1| 70|Homo sapiens ribosomal protein protein.
Length = 70
Score = 126 bits (304), Expect = 1e-29
Identities = 60/70 (85%), Positives = 65/70 (92%)
Frame = +3
Query: 39 MPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVRCSRFLYTLVITDKEKAEKLKQSL 218
MPR+I +IKDFLL ARRKDAKSVKIKKN +NVKF VRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60
Query: 219 PPGLQVKEVK 248
PPGL VKE+K
Sbjct: 61 PPGLAVKELK 70
>BC000603-1|AAH00603.1| 70|Homo sapiens ribosomal protein L38
protein.
Length = 70
Score = 126 bits (304), Expect = 1e-29
Identities = 60/70 (85%), Positives = 65/70 (92%)
Frame = +3
Query: 39 MPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVRCSRFLYTLVITDKEKAEKLKQSL 218
MPR+I +IKDFLL ARRKDAKSVKIKKN +NVKF VRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60
Query: 219 PPGLQVKEVK 248
PPGL VKE+K
Sbjct: 61 PPGLAVKELK 70
>AB007185-1|BAA25844.1| 37|Homo sapiens ribosomal protein L38
protein.
Length = 37
Score = 72.1 bits (169), Expect = 3e-13
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +3
Query: 138 FNVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 248
F VRCSR+LYTLVITDKEKAEKLKQSLPPGL VKE+K
Sbjct: 1 FKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 37
>U26914-1|AAB19094.1| 755|Homo sapiens ras-responsive element
binding protein protein.
Length = 755
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 PVHPRHHGQGEGRETETEF-TSRSPG 235
PVH HG+GE E E E T S G
Sbjct: 390 PVHREEHGRGESHEPEEEHGTEESTG 415
>BC131599-1|AAI31600.1| 478|Homo sapiens RREB1 protein protein.
Length = 478
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 PVHPRHHGQGEGRETETEF-TSRSPG 235
PVH HG+GE E E E T S G
Sbjct: 112 PVHREEHGRGESHEPEEEHGTEESTG 137
>AL589644-1|CAI14574.1| 1723|Homo sapiens ras responsive element
binding protein 1 protein.
Length = 1723
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 PVHPRHHGQGEGRETETEF-TSRSPG 235
PVH HG+GE E E E T S G
Sbjct: 1357 PVHREEHGRGESHEPEEEHGTEESTG 1382
>AL355336-1|CAH73521.1| 1723|Homo sapiens ras responsive element
binding protein 1 protein.
Length = 1723
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 PVHPRHHGQGEGRETETEF-TSRSPG 235
PVH HG+GE E E E T S G
Sbjct: 1357 PVHREEHGRGESHEPEEEHGTEESTG 1382
>AL139095-6|CAI16450.1| 1723|Homo sapiens ras responsive element
binding protein 1 protein.
Length = 1723
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 PVHPRHHGQGEGRETETEF-TSRSPG 235
PVH HG+GE E E E T S G
Sbjct: 1357 PVHREEHGRGESHEPEEEHGTEESTG 1382
>AB019351-1|BAD32778.1| 1687|Homo sapiens zinc-finger motif-enhancer
binding-protein-1 beta protein.
Length = 1687
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 PVHPRHHGQGEGRETETEF-TSRSPG 235
PVH HG+GE E E E T S G
Sbjct: 1321 PVHREEHGRGESHEPEEEHGTEESTG 1346
>AB019254-1|BAD32776.1| 1742|Homo sapiens zinc-finger motif-enhancer
binding-protein-1 protein.
Length = 1742
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 161 PVHPRHHGQGEGRETETEF-TSRSPG 235
PVH HG+GE E E E T S G
Sbjct: 1376 PVHREEHGRGESHEPEEEHGTEESTG 1401
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,868,025
Number of Sequences: 237096
Number of extensions: 588200
Number of successful extensions: 1476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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