Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J01
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   120   3e-28
AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical ...    33   0.039
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    30   0.37 
AF003134-4|AAB54145.2|  395|Caenorhabditis elegans Hypothetical ...    28   1.5  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   2.0  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    27   3.4  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    27   3.4  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    27   3.4  
Z81481-1|CAB03947.1|  404|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z70210-4|CAA94151.1|  142|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   6.0  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   6.0  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    26   6.0  
U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  120 bits (288), Expect = 3e-28
 Identities = 54/70 (77%), Positives = 63/70 (90%)
 Frame = +3

Query: 39  MPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVRCSRFLYTLVITDKEKAEKLKQSL 218
           MP+EI +IKDFL+KARRKDAKSVKIKKN  N KF VRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 219 PPGLQVKEVK 248
           PPG+QVKE+K
Sbjct: 61  PPGIQVKELK 70


>AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical
           protein Y54G11A.2 protein.
          Length = 210

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +3

Query: 3   GIRHDGDITHFIMPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVRCSRFLYTLVIT 182
           G      + H ++P +IN+I + L K RRKD    K +++  + K   +  +        
Sbjct: 109 GFHSHKQVKHTVVPTKINEIVNRLEKTRRKDDIDYKEERDARDAKERQKLKKLEQER--K 166

Query: 183 DKEKAEKLKQS 215
           D+EK E L Q+
Sbjct: 167 DREKKEMLAQN 177


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = +3

Query: 21  DITHFIMPREINDIKDFLLKARRKDAKSVKIKKNP-ENVKFNVR--CSRFLYTLVIT 182
           +I+HF M + I D+K +  + R ++    K++ N  EN++  +R   SRF+Y   +T
Sbjct: 419 NISHFQMAQYIEDLKSYGKRLRGEEWTLCKLEYNSIENIRSPLRPEGSRFIYLPTVT 475


>AF003134-4|AAB54145.2|  395|Caenorhabditis elegans Hypothetical
           protein ZC581.7 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 12  HDGDITHFI-MPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVRCSRFLYTLVITDK 188
           +DGD    + M +E+N ++ +L    +K  +  +IK+NP + K   + +  +  LV + +
Sbjct: 32  NDGDYMIVVKMNQELNKMQLYLAVRLKKGIRRFEIKRNPTSAKIGGKSAPNIGKLVDSMQ 91

Query: 189 EKAEKLK 209
           ++  ++K
Sbjct: 92  KETMEIK 98


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 69  FLLKARRKDAKSVKIKKNPENVKFNVRCSRFLYTLVI 179
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 48  EINDIKDFLLKA-RRKDAKSVKIKKNPENVKFNVR 149
           EI +I+   LKA R+K  K  K  +N E  KFN R
Sbjct: 418 EIEEIEHVQLKALRKKYEKLTKELRNEEEEKFNTR 452


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 24  ITHFIMPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVR 149
           IT F +   I D  D++LK   K  KSVK+K + E + F ++
Sbjct: 150 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAFGLQ 190


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 24  ITHFIMPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVR 149
           IT F +   I D  D++LK   K  KSVK+K + E + F ++
Sbjct: 150 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAFGLQ 190


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 24  ITHFIMPREINDIKDFLLKARRKDAKSVKIKKNPENVKFNVR 149
           IT F +   I D  D++LK   K  KSVK+K + E + F ++
Sbjct: 145 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAFGLQ 185


>Z81481-1|CAB03947.1|  404|Caenorhabditis elegans Hypothetical
           protein C38D9.1 protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 95  IFPTRFQQKIFDIIDFTRHDEVCNVAIVPNS 3
           +F   +Q   + II++TRH++   + I PNS
Sbjct: 367 VFVPGYQSNQWPIINYTRHNKKFLLKITPNS 397


>Z70210-4|CAA94151.1|  142|Caenorhabditis elegans Hypothetical
           protein K08H2.4 protein.
          Length = 142

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 73  KKSLISLISRGMMKCVMSPSCR 8
           KK  I + + G+ KCV SP+C+
Sbjct: 89  KKGEIVIPTGGLAKCVCSPNCK 110


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 YTLVITDKEKAEKLKQSLPPGLQVKEVK 248
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 YTLVITDKEKAEKLKQSLPPGLQVKEVK 248
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 101 FGIFPTRFQQKIFDIIDFTRHDEVCNVAI 15
           FG+FP R   K+   +DFT  DE  N A+
Sbjct: 291 FGLFPIRIFTKVDAYLDFT-DDEKGNTAL 318


>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 48  EINDIKDFLLKARRKDAKSVKIKKNPEN 131
           E +  KD   ++   D  S KIKK+PEN
Sbjct: 732 EDDSFKDTSNRSDNTDGSSKKIKKSPEN 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,557,924
Number of Sequences: 27780
Number of extensions: 88275
Number of successful extensions: 333
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)