Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I23
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    36   0.003
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.8  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 173 ASATGAFTPAPAPRQPDAPGALAPS--ATRLAFIHTLCARK 289
           A+A  A TPAPAP Q  AP A  P      L  +HTL A+K
Sbjct: 118 AAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHTLVAQK 158


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 68  PIKPFTSTRPLDGSGL*TTQKIPCNAS*QWRG*SPASATGAFTPAPAPRQPDAP 229
           P  P  ST PL  +   T+  +  +++       PA +T  F P+P+P  P  P
Sbjct: 284 PPPPHGSTTPLPAAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYP 337


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 228  PAHSPRPPRASLSSTHSVLAKSLMEGPRMTP 320
            P  +P PPR+   ST + LAK + + P ++P
Sbjct: 943  PKEAPPPPRSEPVSTTTKLAKRITQ-PSLSP 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,244
Number of Sequences: 5004
Number of extensions: 38425
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)