Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I20
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.4  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    27   2.4  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   3.2  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   5.6  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    25   7.3  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.7  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.7  

>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 64  HSLTIMPLLIKLQLLPMGFQI 126
           H LT++P LI + LL +G+Q+
Sbjct: 245 HGLTLVPSLILVLLLSLGYQV 265


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 265 SHQSQPQLYYYLHLEHV-LFCVHLNSVRCPHISPHTSHILT 146
           SH    QL+   H+  + +F  HL+ V C    P+++++LT
Sbjct: 440 SHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNSAYVLT 480


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 373 VIEKVQKCITCGGSITNNPKRKGPKLIRCENCIAQ 477
           +IE+ +  I C  + T+  +  G  +  CENC  Q
Sbjct: 669 IIEEPKTLIDCLKNFTHVEELSGENMFACENCCNQ 703


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 355 VHVHDVVAVPYDQDDRICMCGGIVTS 278
           V+V     + ++ +DRIC  GG+V+S
Sbjct: 519 VYVKKTSGLEWNIEDRICQFGGLVSS 544


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 469 IAQDAVDPQRNNQKDNVKFEVSGVN 543
           +A +  + Q+N +K + KFE SGV+
Sbjct: 90  VAAEHKEQQKNREKKSSKFEQSGVS 114


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 130 YYQYYKLKCEMYVDLCGDTLRC*DAHKIIHAQDADSNIT-VVATGVST 270
           +Y   + +   Y ++ G      D H ++H + A SN T + A G +T
Sbjct: 686 HYYNERNQYSQYDNVAGSASNTPDVHSVMHNKVASSNATSLPAAGTAT 733


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 207 QNNTCSRCR**YNCGCDWCEYSVIDVTMPP 296
           Q++T   C   Y C CD C +++ D    P
Sbjct: 393 QHSTIQHCGQEYGCNCD-CPFNIPDYETKP 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,269
Number of Sequences: 5004
Number of extensions: 44013
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)