Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I20
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 298 CGGIVTSITLYSHQSQPQLYYYLHLEHVLFCVHLNSVRCPH 176
           C G V S+T Y H + P  ++       L    L    CPH
Sbjct: 500 CSGEVASLTEYHHVAPPSGHHASSAP--LLAATLAGGLCPH 538


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 9    VNITQLTTSDDKTCYIAQP 65
            ++ TQ+  +DDK C+  +P
Sbjct: 1689 IHRTQVKETDDKICFTMRP 1707


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 92  SNCNYSQWDSKLYITNII 145
           +N NY+ ++ KLY  N I
Sbjct: 334 NNNNYNNYNKKLYYKNYI 351


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 109 PMGFQIIYYQYYKLKCEMYVDLCG 180
           P G QI   +  K+K E++ DL G
Sbjct: 123 PKGIQINATELQKIKLEIHRDLPG 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,041
Number of Sequences: 438
Number of extensions: 3156
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)