Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I18
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.36 
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    26   2.5  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   4.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   5.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.7  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 284 LERVHQVLHQEQHCAGFPCNSAVEDGATSAGRH 186
           LE  H +L  E  C G P ++  E  A S G H
Sbjct: 420 LETQHSLLKAEADCLGLPVSNVSESPAASNGSH 452


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 218 LRCCTESLRSVVPGGGPGGLAQVRSDAVVRHVPRRLL-QRHHAHHPR 355
           L  CT   +  V G  P G A+  S+A+ R  PR    Q+   H PR
Sbjct: 43  LALCTTKDQMFVYGSTPAGGAEWCSEALERSRPRAAFKQQRRRHVPR 89


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = -2

Query: 460 LAEMSLILERASCRFASTC--SLFISYAF-----GNVKSA 362
           L ++S+I ERASC FAS     + + YA      GN+ SA
Sbjct: 333 LNDVSIIYERASCIFASISRPGIRVQYALFEESQGNIASA 372


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 347 DERDAVEA--GAEVRAAPQHHSELERVHQVLHQEQHCAGFPCNSA 219
           DE DA+ A    E +A P    E+  +HQV+H  + C G   ++A
Sbjct: 666 DEADALMAVDSQEKQAEPFELGEVV-IHQVIHTIEFCLGCVSHTA 709


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 108 LVFCTAWSTFL*IRNATAPESTSSEAYAS 22
           L+FC+ W  +  I +A    S++S +Y S
Sbjct: 626 LLFCSGWIAYRAISDAIHNASSTSSSYTS 654


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 235 FRATAQLKMEPRPPAGTATQ 176
           F+ T   K+EP+PP+G+ ++
Sbjct: 301 FKLTPLTKLEPQPPSGSPSK 320


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 140 KDISVPAELRARLGGCACRRTWLHLQLRCCTESLRSVVPGGGPGGL 277
           K+I    ++RAR+  C  +  +  L        + +VV GGGP G+
Sbjct: 222 KEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGM 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,299
Number of Sequences: 5004
Number of extensions: 27352
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)