Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I16
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 30 0.33
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 27 3.1
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 3.1
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 26 4.1
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 5.4
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.4
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 5.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 7.2
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c... 25 9.5
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 9.5
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 249 LVDIKNLHYTITKLLRRINSN 311
L DIKNLHY T+L INSN
Sbjct: 213 LPDIKNLHYWTTRLSPLINSN 233
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 396 PPQLELQKTPNKCL-AKLSNCIITSLDFVNSNLFVEATS**CSEGF 262
P Q E Q PN C+ L C+I +F +S+ F++ S CS +
Sbjct: 7 PSQPESQAQPNLCIPCSLGTCLIHFHEF-SSSSFMDPVSLFCSSPY 51
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = -3
Query: 443 KVHAVSLCRAGDGCKSLPNWSYKRRRINASLNCLTV*SHHWTSSIRIYSSKQLRDSVVK 267
+V++V L +GD LPN S R +N L + + H SS IYS+ +D V+
Sbjct: 199 RVYSVDLRDSGD--VQLPNQSTFRHSVNRDLLGSSSTTSHDRSSGSIYSNDSFQDPRVQ 255
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 434 AVSLCRAGDGCKSLPNWSY 378
++++CRAG K LP W Y
Sbjct: 115 SMAICRAGAAQKKLPLWKY 133
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 580 VPHWYPCASYLFWL 621
VPH YP AS++ WL
Sbjct: 183 VPHHYPKASFVLWL 196
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 401 KSLPNWSYKRRRINASLNCLTV*SHHWT 318
K LP+W++K+ IN + N T S WT
Sbjct: 499 KPLPDWAFKQLEINGAKNIQTG-SIFWT 525
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 573 WVVTLVLLSYLIPTFCNK--RKK*REPMYARM 484
WV L+L L+P +C K ++K + YA++
Sbjct: 1000 WVSALILFISLLPVWCGKALKRKLKPSSYAKL 1031
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 79 FTLLKLGTNTETNIFNKHWRSLESSLT*STNYMMYMTAW-IFG 204
F + +G N TN++ KHW + + L + Y+ + +FG
Sbjct: 909 FIIGGIGMNVGTNVWLKHWSEVNTQLGYNPKPYFYLGIYTLFG 951
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -3
Query: 476 GVRVRCDACNTKVHAVSLCRAGDGCKSLPNWSYKRRRINASLNCLTV*SHHWT 318
G RV+ C + V A D KSL + K + +NA L L H WT
Sbjct: 727 GCRVKVFGCEPILQYVY--EAKDKHKSLHVYLEKSKDVNAELRSLDTIDHLWT 777
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = -1
Query: 598 KGTNEVQTLGCNSGPIVLSDPYFL*QKKKIKRTHVRTYDVQECVCDVMRVILKCMQCH 425
+ NE Q N I D L + ++ + +V ++R+++KC++CH
Sbjct: 134 QNVNEPQDAYSNDHDIQSKDTELLGNEYCLEWKNPHLTNVGTLKAPILRLVIKCVRCH 191
>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 362 NASLNCLTV*SHHWTSSIRIYSS-KQLRDSVVKVFNIDETLLLDLTFKFFN 213
N +C + ++ + + Y + KQ DS +KVFNI + + T++ N
Sbjct: 39 NGIRDCSGIPVNNRNLAFKAYDAVKQKYDSSIKVFNIQDITIKGATWQHHN 89
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 442 LVLHASHRTRTPAHHTCVHGFSLFFSFVTKSRDQIGQ*DQSYNP 573
L +H +H TP + F+ FV + D SYNP
Sbjct: 219 LTVHQNHSAHTPTSYLPESFIQDFYDFVLWGHEHECLIDGSYNP 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,909
Number of Sequences: 5004
Number of extensions: 52479
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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