Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I16
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647...    29   3.2  
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140     28   5.6  
01_03_0025 + 11739930-11740493,11740820-11741020,11741143-117412...    28   7.4  
12_01_0005 + 34977-35516,35620-35777,35889-37192,37532-37626,387...    27   9.8  
11_01_0006 + 36564-37103,37207-37364,37476-38779,39119-39213,403...    27   9.8  

>06_03_0203 -
           17863130-17863940,17864023-17864341,17864653-17864716,
           17864811-17864929,17865515-17865640,17866626-17866632,
           17867421-17867562,17867720-17867738,17868082-17868292
          Length = 605

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 416 AGDGCKSLPNWSYKRRR 366
           AG+GC SL +W+++R+R
Sbjct: 45  AGEGCSSLADWAHQRKR 61


>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
          Length = 695

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 585 RYKPWVVTLV--LLSYLIPTFCNKRKK*REPMYARM 484
           R  PW+V LV  + +  +P+F   RKK R P YA +
Sbjct: 373 RVCPWLVELVSSMPNLHLPSFSPPRKKPRNPPYAEL 408


>01_03_0025 +
           11739930-11740493,11740820-11741020,11741143-11741235,
           11741355-11742125
          Length = 542

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 121 FNKHWRSLESSLT*STNYMMYMTAWI 198
           F +HWR L  SL+ S +  + M +W+
Sbjct: 88  FRRHWRRLSLSLSLSLSLSLAMVSWL 113


>12_01_0005 +
           34977-35516,35620-35777,35889-37192,37532-37626,
           38738-38816,38938-38954
          Length = 730

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 160 KSTNFPDYASVC*RCSS 110
           +ST FPDYA  C  C S
Sbjct: 486 QSTGFPDYAKACTECDS 502


>11_01_0006 +
           36564-37103,37207-37364,37476-38779,39119-39213,
           40324-40402,40524-40540
          Length = 730

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 160 KSTNFPDYASVC*RCSS 110
           +ST FPDYA  C  C S
Sbjct: 486 QSTGFPDYAKACTECDS 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,312,880
Number of Sequences: 37544
Number of extensions: 311191
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)