Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I16
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.8  
AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical...    28   6.6  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   8.7  

>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 568 CNSGPIVLSDPYFL*QKKKIKRTHVR---TYDVQECVCDV 458
           C  GPI++S P+F    K + +   R   TYD  E + D+
Sbjct: 420 CTGGPIIMSKPHFYQASKVVSKFVPRFKPTYDNDETMLDI 459


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 527  VTKEKNKENPCTHV*CAGVRVRCDACNTKVHAVSLCRAGDGC 402
            V+ E     P   + C GV+VRC   N  +    LC   D C
Sbjct: 2904 VSDESLATCPGLPIDCRGVKVRCPNTNICIQPADLCDGYDDC 2945


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 527  VTKEKNKENPCTHV*CAGVRVRCDACNTKVHAVSLCRAGDGC 402
            V+ E     P   + C GV+VRC   N  +    LC   D C
Sbjct: 2904 VSDESLATCPGLPIDCRGVKVRCPNTNICIQPADLCDGYDDC 2945


>AC024830-10|AAF59610.3|  728|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.1 protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 476 GVRVRCDACNTKVHAVSLCRAGDGCKSLPNW 384
           G R +  AC+  +H   +CR  D   S P W
Sbjct: 395 GTRRQVIACSATLHNFEVCRFADRHMSFPQW 425


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 377  CNSNWGGSYSRHQRDT 424
            C++NW G++ +HQ DT
Sbjct: 1393 CDNNWRGAHCQHQMDT 1408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,658,110
Number of Sequences: 27780
Number of extensions: 298048
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)