Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I15
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    28   1.1  
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    28   1.1  
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    28   1.4  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    27   3.2  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   7.4  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 77  KIISKFLPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 256
           K+    L S +K    T R+    +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 84  KVPGYILKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 77  KIISKFLPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 256
           K+    L S +K    T R+    +A++L+       +   +P +  ++++K  GEMW++
Sbjct: 84  KVPGYILKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 259
           MSA+M +    RE++K+++P     ++    G+ WK +
Sbjct: 20  MSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 50  STVWLCTSSKIISKFLPSGKKIK*RTSRSGPLMSA 154
           S  WL +  K+I   LP  K +   T+R  PL+++
Sbjct: 198 SMAWLVSDDKVIDASLPDIKNLHYWTTRLSPLINS 232


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 307 LFFSLGCFLFPNTFIFH*FPHFTSFFGYFSDFQPRM 200
           LF+ L C   P  F  H     T+F  YF+   P +
Sbjct: 211 LFYDLNCQDIPEFFEDHMSEFMTAFLNYFTYTNPSL 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,128
Number of Sequences: 5004
Number of extensions: 43340
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)