Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I15
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    45   5e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560...    40   0.001
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    40   0.002
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    38   0.005
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           36   0.022
08_02_1378 + 26536082-26537803                                         35   0.067

>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +2

Query: 149 SAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 268
           +A+ L+++  R++ K+EHP  K V+ +AK+GGE WKSM D+
Sbjct: 97  TAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137


>09_06_0203 +
           21555747-21555805,21555862-21555939,21556034-21556091,
           21556191-21556235,21556514-21556549,21556855-21556935,
           21557016-21557087,21557184-21557195
          Length = 146

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 59  WLCTSSKIISKFLPSGKKIK*RTSRSGPLM--SAYMLWLNSAREQIKSEHPGLK-VTEIA 229
           W C  ++    F  S +K K     + P    SA+ +++   R+  K +HP +K V+ I 
Sbjct: 10  WFCACAR--GWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIG 67

Query: 230 KKGGEMWKSMKD 265
           K GG+ WKSM D
Sbjct: 68  KAGGDKWKSMTD 79


>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXXXQYAKD 319
           M+ +M +  + R  +K+ +P L  TEIAKK GEMW+ M  ++K  +         +Y K+
Sbjct: 603 MTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKE 662

Query: 320 LESY 331
              Y
Sbjct: 663 SAVY 666


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXXXQYAKD 319
           ++ +M +  + R  +K+ +P L  TEIAKK GE W+ M  ++K  +         +YA++
Sbjct: 562 IAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEE 621

Query: 320 LESY 331
             +Y
Sbjct: 622 SAAY 625


>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 149 SAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXXXQYAKDL 322
           S+++L+   AR Q+  E PG+  + +       WK +   +K  W          Y +D+
Sbjct: 419 SSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAAYKRDM 478

Query: 323 ESY 331
           E Y
Sbjct: 479 EEY 481



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 152 AYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 259
           AY+LW      +IK E P     E++   G  WK++
Sbjct: 163 AYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198


>08_02_1378 + 26536082-26537803
          Length = 573

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 23/58 (39%), Positives = 31/58 (53%)
 Frame = -1

Query: 408 GAAFLPFFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAAFSSQILLSFIDFHISPP 235
           G+AFLP     CAFL       PL+L ++   A+CS+A    S   L+S I  H+S P
Sbjct: 111 GSAFLPALASACAFLVARSHRLPLSLAEAAETAFCSVA----SLADLVSRIASHLSLP 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,804,042
Number of Sequences: 37544
Number of extensions: 254891
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)