Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I15
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 51 6e-07
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 49 3e-06
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 49 3e-06
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 46 2e-05
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 40 0.001
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 40 0.001
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 40 0.001
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 40 0.001
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 37 0.015
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 36 0.026
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 35 0.045
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 33 0.18
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 33 0.18
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 33 0.18
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 33 0.18
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 33 0.18
Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 27 9.1
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 27 9.1
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 27 9.1
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 27 9.1
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 27 9.1
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 27 9.1
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 27 9.1
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +2
Query: 104 GKKIK*RTSRSGP--LMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKS 271
GKK K + P SAYM W ++R ++K + G V ++AKKGG WK+M DK
Sbjct: 544 GKKGKKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKK 601
Query: 272 IWXXXXXXXXXQYAKDLESYNAN 340
W +Y K+++ Y N
Sbjct: 602 KWEEKAEEDKSRYEKEMKEYRKN 624
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXXXXXXQYAKDLE 325
MSA+ W+ RE+IK PG+ V ++AK G W + DKS W +Y D+
Sbjct: 32 MSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIA 89
Query: 326 SY 331
+Y
Sbjct: 90 NY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXXXXXXQYAKDLE 325
MSA+ W+ RE+IK PG+ V ++AK G W + DKS W +Y D+
Sbjct: 32 MSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIA 89
Query: 326 SY 331
+Y
Sbjct: 90 NY 91
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 89 KFLPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK-- 262
K + GKK K + +AY++W N+ R +K + G + ++AKK G WKSM
Sbjct: 547 KAVKKGKKTK-DPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSAD 603
Query: 263 DKSIWXXXXXXXXXQYAKDLESYNAN 340
DK W +Y +++ Y N
Sbjct: 604 DKKEWNDKAAQDKARYEAEMKEYKKN 629
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWXXXXXXXXXQYAKD 319
+SA+ + R +I++ HP KV ++A++ G+MWK + K ++ +YA +
Sbjct: 138 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADE 197
Query: 320 LESYNA 337
+ +Y A
Sbjct: 198 MRNYKA 203
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 149 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 265
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWXXXXXXXXXQYAKD 319
+SA+ + R +I++ HP KV ++A++ G+MWK + K ++ +YA +
Sbjct: 137 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADE 196
Query: 320 LESYNA 337
+ +Y A
Sbjct: 197 MRNYKA 202
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 149 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 265
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWXXXXXXXXXQYAKD 319
+SA+ + R +I++ HP KV ++A++ G+MWK + K ++ +YA +
Sbjct: 139 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADE 198
Query: 320 LESYNA 337
+ +Y A
Sbjct: 199 MRNYKA 204
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 149 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 265
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWXXXXXXXXXQYAKD 319
+SA+ + R +I++ HP KV ++A++ G+MWK + K ++ +YA +
Sbjct: 139 LSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADE 198
Query: 320 LESYNA 337
+ +Y A
Sbjct: 199 MRNYKA 204
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 149 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 265
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +2
Query: 101 SGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 268
+GK K R M+A+M+W R+++ E+P + +EI+K+ G WK + ++
Sbjct: 49 TGKDGKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 268
M+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 97 MNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 35.1 bits (77), Expect = 0.045
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 268
M+A+M+W R ++ ++P + +EI+K+ G WK + ++
Sbjct: 52 MNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 265
M+A+M+W R +I +P + + I+K G WK M +
Sbjct: 182 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 265
M+A+M+W R +I +P + + I+K G WK M +
Sbjct: 179 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 265
M+A+M+W R +I +P + + I+K G WK M +
Sbjct: 285 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 265
M+A+M+W R +I +P + + I+K G WK M +
Sbjct: 333 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 146 MSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 265
M+A+M+W R +I +P + + I+K G WK M +
Sbjct: 333 MNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical
protein K09C8.2 protein.
Length = 251
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 285 FSSQILLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 166
F LL+++ FH+ F A+SV+F + +C + LLS
Sbjct: 37 FIMACLLNYVSFHVGNDFYAVSVSFVHVGAVFVCIVILLS 76
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 2 IRHEGSSSIHFFWFSTSTVWLCTSSKIISKFL 97
+ H + S+ WF+ + W+ T S + SK L
Sbjct: 262 LAHRANRSVGALWFNAAETWVDTQSSVTSKGL 293
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 2 IRHEGSSSIHFFWFSTSTVWLCTSSKIISKFL 97
+ H + S+ WF+ + W+ T S + SK L
Sbjct: 276 LAHRANRSVGALWFNAAETWVDTQSSVTSKGL 307
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 95 LPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTE 223
LPSG ++ + SG + L LN RE+I +HP +++ E
Sbjct: 5108 LPSGDLVRLKIYFSGTAPFRHSLVLN--REEIDMDHPTIRIVE 5148
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 95 LPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTE 223
LPSG ++ + SG + L LN RE+I +HP +++ E
Sbjct: 5637 LPSGDLVRLKIYFSGTAPFRHSLVLN--REEIDMDHPTIRIVE 5677
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 95 LPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTE 223
LPSG ++ + SG + L LN RE+I +HP +++ E
Sbjct: 5318 LPSGDLVRLKIYFSGTAPFRHSLVLN--REEIDMDHPTIRIVE 5358
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 95 LPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTE 223
LPSG ++ + SG + L LN RE+I +HP +++ E
Sbjct: 5108 LPSGDLVRLKIYFSGTAPFRHSLVLN--REEIDMDHPTIRIVE 5148
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 95 LPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTE 223
LPSG ++ + SG + L LN RE+I +HP +++ E
Sbjct: 5637 LPSGDLVRLKIYFSGTAPFRHSLVLN--REEIDMDHPTIRIVE 5677
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 95 LPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTE 223
LPSG ++ + SG + L LN RE+I +HP +++ E
Sbjct: 5318 LPSGDLVRLKIYFSGTAPFRHSLVLN--REEIDMDHPTIRIVE 5358
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 149 SAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 268
S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 149 SAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 268
S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 149 SAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 268
S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 95 LPSGKKIK*RTSRSGPLMSAYMLWLNSAREQIKSEHPGLKVTE 223
LPSG ++ + SG + L LN RE+I +HP +++ E
Sbjct: 4527 LPSGDLVRLKIYFSGTAPFRHSLVLN--REEIDMDHPTIRIVE 4567
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 126 QAEAAPLCQPICCGSTVPENRSSLNIL 206
Q+ AP CQP+C S V + + + ++
Sbjct: 188 QSSCAPACQPMCSSSCVQQQQQQIIVV 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,709
Number of Sequences: 27780
Number of extensions: 237343
Number of successful extensions: 589
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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