Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I14
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   5.0  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   6.5  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.7  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   8.7  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 256 YTFHSLGSGNIMRLVRHQTRLKIEATRVLIAVFQASVAH 140
           YT H     N+M ++R++TRL       L  ++   + H
Sbjct: 483 YTEHHARVSNVMEMIRNKTRLPPRTIMDLTKLYMEYLCH 521


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -1

Query: 492 DVFGLWIVRLDCRKQRISILNRISEDRTFGLWIV--TFGLVNVH-LNYGTYVCIMYHTF 325
           +V GL I +L     R S+L+     RTFG+WI+    G+ + H L +  +V ++Y  F
Sbjct: 257 NVSGLAITKLHSATTR-SLLDIA---RTFGIWIIAMAMGMESFHLLQFLGFVLLIYGIF 311


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 343 YHVSYVWIMRTLRLYVILVW 284
           Y   YV  +RTLRLY + +W
Sbjct: 906 YDRGYVRGLRTLRLYFLKIW 925


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 160 IRRLRRVWPRFLNVSDDGRA 219
           I R++RVWPR   +S+  RA
Sbjct: 60  IARMKRVWPRIPTISNVCRA 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,556
Number of Sequences: 5004
Number of extensions: 54343
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)