Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I14
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0074 + 17901185-17901258,17901758-17901845,17902195-179023...    30   1.2  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    27   8.8  

>01_05_0074 +
           17901185-17901258,17901758-17901845,17902195-17902332,
           17902820-17903044,17903176-17903358,17903453-17903697,
           17905640-17905685,17905784-17905876
          Length = 363

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -3

Query: 238 GSGNIMRLVRHQTRLKIEATRVLIAVFQASVAHTKTRKHRLSRITQNTHFFL 83
           GSG I++LVRH+    + A + +    Q +V     ++ ++++ TQN H  L
Sbjct: 80  GSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNAHIVL 131


>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 167  RRIPSVGCSHENSQT*TLSHYTKHT 93
            R+IP  GCSH NS    L+  T+ T
Sbjct: 1063 RKIPLPGCSHSNSSHGDLAENTEET 1087


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,244
Number of Sequences: 37544
Number of extensions: 303377
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)