Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I14
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm rece...    28   4.5  
AF098997-12|ABF71720.1|  377|Caenorhabditis elegans Hypothetical...    28   6.0  
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 71  KEYGDCNCKAKLKITYYT 18
           K YG C  K KLK T+YT
Sbjct: 268 KPYGSCTTKTKLKTTHYT 285


>AF026209-8|AAB71275.2|  328|Caenorhabditis elegans Seven tm
           receptor protein 134 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 348 VCIMYHTFGLCVRLDCM*YLCGALRFQHKYITHFI 244
           VCI   +FGLC+ L C  Y+   +   H+   H I
Sbjct: 89  VCIFGASFGLCISLLCTQYMFRYIVICHQKYLHLI 123


>AF098997-12|ABF71720.1|  377|Caenorhabditis elegans Hypothetical
           protein T10D4.1 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 94  VCFV*CERVYVCEFSCEQPT 153
           +C+V CE  Y CE  CE P+
Sbjct: 11  ICYVACEDEYGCEDDCECPS 30


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 447 RISILNRISEDRTFGLWIVTFGLVNVHLNYGTYVCIMYHTFGL 319
           ++ + + I + RT   WI  +  V + + Y   VC+  HT+ L
Sbjct: 207 QVVVQDEIKKFRTGLAWICNYDWVPIPIMYPQLVCLAVHTYFL 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,141,523
Number of Sequences: 27780
Number of extensions: 299751
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)