Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I14
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 163 RRLRRVWPRFLNVSDDGRASLCSQTLSYEMCNIF 264
           RR RR  PR+ +VS   RAS     L +   N+F
Sbjct: 408 RRRRRRTPRYNSVSKIDRASRIVFPLFFLAINVF 441


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 502 DECGCIWIVD 473
           D+CG +WI+D
Sbjct: 129 DKCGRLWILD 138


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/24 (20%), Positives = 13/24 (54%)
 Frame = -3

Query: 391 NIWTGERTSELWNVRLYHVSYVWI 320
           N+W+G  +  +W  ++   +  W+
Sbjct: 355 NLWSGFCSQCIWQEKIVFAAVTWL 378


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 462 DCRKQRISILNRISEDRTFGLWIVTFGLVN 373
           DC K  I    +I+ D+   LW++  GLVN
Sbjct: 118 DCSK--IVSAFKIAIDKFDRLWVLDSGLVN 145


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 429 RISEDRTFGLWIVTFGLVN 373
           +I+ D+   LW++  GLVN
Sbjct: 132 KIAVDKFDRLWVLDSGLVN 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,697
Number of Sequences: 438
Number of extensions: 3897
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)