Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I13
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 86 4e-18
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.23
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 30 0.23
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 1.6
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 2.2
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 2.2
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 27 2.2
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.2
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.9
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 3.8
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 5.0
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 26 5.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.0
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 6.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.8
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 85.8 bits (203), Expect = 4e-18
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 1/197 (0%)
Frame = +1
Query: 25 GNNVSGEDPTVNALENKN*AVNASGKQAGSVRTLRGLWLILIALMVHCNRRGSEAIVGSL 204
G+ V ED LE +GK+A T G + + H ++ I
Sbjct: 53 GDCVYEEDEDTRKLEVY--VAKLTGKEAALFVT-SGTQGNQLCIRSHLHQPPHSIICDDR 109
Query: 205 SHIYKSEQGGGAHIAGVLLSTLENKPDGTFEINELE-KRIRGSDIHEPTTSLVAIENTHN 381
+HIY E G ++ + K + E+E K I G+DIH T L+ +ENT
Sbjct: 110 AHIYNWEAGAIGLFTQAIVRPISPKNNVYITAEEIENKLILGNDIHFSPTGLICLENTIK 169
Query: 382 MCGGKVLPLKFLDDVSAVCRKHSLALHMDGARLFNACEYLGESPARVVRDCDSVSVCFSK 561
G V+PL + +S + + H + LH DGARL++A S DSVS+C SK
Sbjct: 170 ---GAVVPLDEVARISGLAKAHKIPLHCDGARLWDAAVASNVSIKEYCSYFDSVSLCLSK 226
Query: 562 GLSAPVGSALLGTCHFI 612
GL+APVGS ++G FI
Sbjct: 227 GLAAPVGSIIVGPRDFI 243
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.23
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
Frame = -3
Query: 578 TGAESPLLKQTETESQSRTTRAGLSPKY----SHALNSRAPSMCSASECFLHTADTSSRN 411
T + P + T + + S S Y S +S +PS S+S + TSS
Sbjct: 182 TSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIP 241
Query: 410 FNGSTFPPHMLCVFSIATSDVVGSWMSEPRILFSSSFISKVPSGLFSRVDRRTPAMCAPP 231
S+ + S ++S S S I+ SSS S P+ S + + + +P
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPT 301
Query: 230 PCS 222
S
Sbjct: 302 STS 304
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 304 ELEKRIRGSDIHEPTTSLVAIENTHNMCGGKVLPLKFLDDVS 429
+L + G +HEP T LVAI +T G++L +D V+
Sbjct: 225 DLHSGVFGGTVHEPMTDLVAIMSTLVKPNGEILIPGIMDQVA 266
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 491 HALNSRAPSMCSASECFLHTADTSSRNFNG--STFPPHMLCVFSIATSDVVGSWMSE 327
H NS+ + S S+ F+H N +G S L S+A SD++ SW+ +
Sbjct: 23 HIDNSKVALLFSKSKVFVHPTSKMKDNISGYLSLSKSKALGNSSVAGSDILLSWVPD 79
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 530 SRTTRAGLSPKYSHALNSRAPSMCSASECFLHTADTSSRNFNGSTFPP 387
++ + LSP SHA+ ++AP + S + SS +FN S P
Sbjct: 489 NKNDESSLSPAKSHAVITQAPKIPLISTFTRLSTRKSSNDFNSSNSRP 536
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 501 QVLARVEQPRAVHVQRQRVLPAHR*HVIQELQREHLS 391
+V+ARV + RA+ Q +PA +IQE E +S
Sbjct: 681 EVIARVAEERAITGQPAITVPAEEEEIIQETVEEVIS 717
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 228 GRWRAHRWRSSVHSGEQARRYLRDK*TGEED 320
GR R RWR S S + RY RD + E D
Sbjct: 264 GRSRDGRWRESRTSYREKHRYDRDALSSESD 294
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 437 HTADTSSRNFNGSTFPPHMLCVFSIATSDVVGSWMS 330
H + +SR F+G T P ++ V ++ VGS++S
Sbjct: 235 HIRELNSRFFHGLTLVPSLILVLLLSLGYQVGSFLS 270
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 416 WMTCQRCAGSTRWRCTWTARGC 481
W CQRC GS T+R C
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDC 1058
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 328 SDIHEPTTSLVAIENTHNMCGGKVLPLKFLDDVSAVCRKHSLALHMDGARLFNACEYLGE 507
SD+H VAI H + K + ++ AV R+ + +H+ + NA + G+
Sbjct: 1186 SDLHSYLQQAVAINKDHPVVISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGD 1245
Query: 508 S 510
+
Sbjct: 1246 A 1246
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 371 FSIATSDVVGSWMSEPRILFSSSF 300
FSI++SD+V WM E L F
Sbjct: 191 FSISSSDLVSKWMGESERLVRQLF 214
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +1
Query: 250 GVLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLVAIENTHNMCGGKVLPLKFLDDVS 429
G ++ L + +G ++EL IR + S++A+ N +C + L+++
Sbjct: 212 GFEVTFLPVQTNGLINLDELRDAIRPDTV---CVSVMAVNNEIGVC-------QPLEEIG 261
Query: 430 AVCRKHSLALHMDGAR 477
+CR+ + H D A+
Sbjct: 262 KICRQKKVFFHSDAAQ 277
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 304 HLSRRYRLACSPEWTEERQRCARH 233
HL R YR P W E+ ++ A H
Sbjct: 684 HLERAYRREAIPLWEEDAKQQAEH 707
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 332 SEPRILFSSSFISKVPSGLFSRVDR 258
+E + +SSF+ KVP G+F + R
Sbjct: 1551 NESMVGTTSSFLDKVPDGIFLKTSR 1575
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.8
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = -3
Query: 590 SAEPTGAESPLLKQTETESQSRTTRAGLSPKYSHALNSRAPSMCSASECFLHTADTSSRN 411
S+ + + S + + S S ++ + S S + +S P S S H++ +SS +
Sbjct: 169 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSS--HSSSSSSSS 226
Query: 410 FNGSTFPPHMLCVF--SIATSDVVGSWMSEPRILFSSSFISKVPS 282
+ S+ P F ++++S + + P SSS S+VPS
Sbjct: 227 SSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSS-SSSTSSEVPS 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,138
Number of Sequences: 5004
Number of extensions: 54689
Number of successful extensions: 153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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