Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I13
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0511 - 25800371-25800454,25800563-25800629,25800903-258010... 171 5e-43
09_02_0529 + 10276063-10277439 31 0.73
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 29 2.2
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 29 3.9
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 29 3.9
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 29 3.9
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 29 3.9
01_05_0019 + 17219759-17219819,17219917-17220231,17220997-17221112 29 3.9
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 28 5.2
10_07_0138 + 13325418-13325954 28 6.8
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 28 6.8
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 28 6.8
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 28 6.8
04_04_0921 - 29431812-29432786 28 6.8
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 28 6.8
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 28 6.8
10_06_0020 - 9693126-9693437,9694940-9695368 27 9.0
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562... 27 9.0
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530... 27 9.0
03_05_1053 - 29987908-29987985,29988096-29988152,29988229-299883... 27 9.0
01_06_0954 - 33322951-33323606,33324213-33325014 27 9.0
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888 27 9.0
>04_04_0511 -
25800371-25800454,25800563-25800629,25800903-25801000,
25801094-25801152,25801247-25801379,25801461-25801532,
25801628-25801678,25802000-25802111,25802231-25802604
Length = 349
Score = 171 bits (415), Expect = 5e-43
Identities = 90/199 (45%), Positives = 126/199 (63%), Gaps = 2/199 (1%)
Frame = +1
Query: 28 NNVSGEDPTVNALENKN*AVNASGKQAGSVRTLRGLWLILIALMVHCNRRGSEAIVGSLS 207
++V G DPT + E + +GK+A ++ G LI+++VHC+ RGSE I+G S
Sbjct: 8 DDVLGADPTAHRFEME--MARITGKEA-ALFVPSGTMANLISVLVHCDTRGSEVILGDNS 64
Query: 208 HIYKSEQGGGAHIAGVLLSTLENKPDGTFEINELEKRIRGSD--IHEPTTSLVAIENTHN 381
HI+ E GG + I GV T+ N PDGT +I+++ IR D ++ PTT L+ +ENTH
Sbjct: 65 HIHIYENGGISTIGGVHPKTVRNNPDGTMDIDKIVVAIRHPDGALYYPTTRLICLENTHA 124
Query: 382 MCGGKVLPLKFLDDVSAVCRKHSLALHMDGARLFNACEYLGESPARVVRDCDSVSVCFSK 561
CGGK L ++ D+V V + H L LH+DGAR+FNA LG R+V+ DSVSVC SK
Sbjct: 125 NCGGKCLSAEYTDEVGEVAKSHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCISK 184
Query: 562 GLSAPVGSALLGTCHFIEQ 618
GL APVGS ++G+ FIE+
Sbjct: 185 GLGAPVGSVIVGSTAFIEK 203
>09_02_0529 + 10276063-10277439
Length = 458
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +1
Query: 250 GVLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLVAIENTHNMCGGKVLPLKFLDDVS 429
G ++ L +PDG ++ +L IR P T LV++ +N G V PL +++
Sbjct: 171 GFEVTYLPVRPDGLVDVAQLADAIR------PDTGLVSVMAVNNEIG-VVQPL---EEIG 220
Query: 430 AVCRKHSLALHMDGAR 477
+C++ + H D A+
Sbjct: 221 RICKEKGVPFHTDAAQ 236
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 361 RLATSSARGCQSLGSSSP-VHLSRRYRLACSPEWTEERQRCARHLPAR 221
+L T+++ S +S P HL RL+ P + R+RCA HLP++
Sbjct: 2 QLLTAASASASSAAASPPSAHL---LRLSRPPPFPHLRRRCAPHLPSK 46
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 464 MCSASECFLHTADTSSRNFNGSTFPPHMLCVFSIATSDVVGSWMSEP 324
+ SA +L A +SR+ N P + L S+AT+ SW +P
Sbjct: 55 LLSADNAWLEVAANTSRSPNFFATPSNCLTDASVATTTPANSWWIQP 101
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 377 ITCAVERCSR*SSWMTCQRCAGSTRWRCTWTARGCSTRASTW 502
ITC + R R TC RC C W + C + + W
Sbjct: 402 ITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVS-NCIGKKNKW 442
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 377 ITCAVERCSR*SSWMTCQRCAGSTRWRCTWTARGCSTRASTW 502
ITC + R R TC RC C W + C + + W
Sbjct: 367 ITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVS-NCIGKKNKW 407
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 28.7 bits (61), Expect = 3.9
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Frame = +1
Query: 175 RGSEAIVGSLSHIYKSEQGGGAHIAGVLLSTLENKPDGTFEINELEKRIRGSD--IHEPT 348
+G I SL+H + GA +G + E+ E L ++I G H
Sbjct: 195 KGGLIISDSLNH---NSIVSGARASGATIRVFEHNNPAHLE-KLLREQISGGQPRTHRAW 250
Query: 349 TS-LVAIENTHNMCGGKVLPLKFLDDVSAVCRKHSLALHMDGARLFNA--------CEYL 501
LV +E ++M G L L ++ +VC+K+ + +MD A A CE L
Sbjct: 251 KKILVIVEGIYSMEG----ELCKLPEIISVCKKYKVYTYMDEAHSIGAVGKTGRGVCELL 306
Query: 502 GESPARV 522
G PA V
Sbjct: 307 GVDPADV 313
>01_05_0019 + 17219759-17219819,17219917-17220231,17220997-17221112
Length = 163
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 328 SLGSSSPVHLSRRYRLACSPEWTEE 254
+LGSSSPV R+ LA S +W E+
Sbjct: 119 ALGSSSPVEHERKKSLAKSDKWAEK 143
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 280 ACSPEWTEERQRCAR 236
ACSP WT R RC R
Sbjct: 231 ACSPAWTPRRPRCRR 245
>10_07_0138 + 13325418-13325954
Length = 178
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 395 RCSR*SSWMTCQRCAG--STRWRCTWTARGCSTRASTWARV 511
RCSR W +R S RWR +W R CS R W R+
Sbjct: 86 RCSR--RWRRSRRWRSRCSRRWRRSWRRRRCSRR---WRRL 121
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 235 GAHIAGVLLSTLENKPDGTFEINELEK-RIRGSDIHEPT-TSLVAIENTHNMCGG 393
G H+ + L + D E +++ I GSD+ T T LVA+ +T ++CGG
Sbjct: 816 GVHMIKLELGWEDVVNDEDGEAGDVDSDNIGGSDVGVQTVTMLVAVMSTRSLCGG 870
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 413 SWMTCQRCAGSTRWRCTWTARGC-STRASTWARVR 514
+W + C S RWR TW + C RA + R R
Sbjct: 85 AWEVVRTCVLSRRWRHTWASAPCVDIRAPSSRRER 119
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -3
Query: 608 KWQVPRSAEPTGAESPLLKQTETESQSRTTRAGLSPKYSHALNSRAPSMCSASECFL 438
+ QV S +P PL +TES + + YS + P++CS + L
Sbjct: 192 RMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFDMNVPAVCSVDQAVL 248
>04_04_0921 - 29431812-29432786
Length = 324
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 383 CAVERCSR*SSWMTCQRCAGSTRWRCTWTARGCSTRASTWARVRLASCATVT 538
C+ RC+ W+ C G +RW W+A G +S+W R RL S T
Sbjct: 151 CSSGRCA----WLRC----GGSRW---WSAAGGRWLSSSWPRRRLFSAGRGT 191
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -3
Query: 479 SRAPSMCSASECFLHTADTSSRNFNGSTFPPHMLCVFSIATSDVVGSWMSEPRILF---S 309
+R S S+SE F+ D F T P C+ A++ + + ++L S
Sbjct: 168 ARKISARSSSEQFVVKPDKKKARFLKDTPQPDP-CLLKDASTGITKPAKEQGKLLVTMPS 226
Query: 308 SSFISKVPSGLFSRVDRRT 252
SS +K+P F RVD T
Sbjct: 227 SSTSTKIPQSSFPRVDSET 245
>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 596 PRSAEP-TGAESPLLKQTETESQSRTTRAGLSPKYSHALNSRAPSMCSA 453
P SA P TG SP+ +Q + +T+R+ YS A +C+A
Sbjct: 1131 PASATPRTGLSSPIPEQEVPTAHWKTSRSACDTPYSRASPIPEQEVCTA 1179
>10_06_0020 - 9693126-9693437,9694940-9695368
Length = 246
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 280 ACSPEWTEERQRCARHL 230
ACS W + R+ C+RHL
Sbjct: 156 ACSGSWRQRRRPCSRHL 172
>08_01_0652 +
5627226-5628395,5628885-5629040,5629115-5629304,
5629590-5629729
Length = 551
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 413 SWMTCQRCAGSTRWRCTWTARGC 481
+W + C S RWR TW + C
Sbjct: 56 AWEVVRTCVLSRRWRHTWASAPC 78
>06_01_0724 +
5299278-5299542,5299690-5299950,5300246-5300351,
5300633-5300697,5300759-5301233,5302239-5302347,
5302432-5302710,5303025-5303231,5303319-5303468,
5304164-5304277
Length = 676
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 379 NMCGGKVLPLKFLDDVSAVCRKH 447
NMC + KF+D+V+AV ++H
Sbjct: 473 NMCSAEQFTQKFIDNVNAVLQQH 495
>03_05_1053 -
29987908-29987985,29988096-29988152,29988229-29988344,
29988900-29989038,29989430-29989558,29990218-29990325,
29990418-29990645
Length = 284
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 382 CYVYFQ*RLATSSARGCQSLGSSSPVHLSRRYRLACSPEWTEERQR 245
C++ + L T A C SL + R L P W E+++R
Sbjct: 238 CFILVEYPLKTDMAESCGSLIKVADRRFGRTNLLIYGPTWAEKKRR 283
>01_06_0954 - 33322951-33323606,33324213-33325014
Length = 485
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = +1
Query: 160 VHCNRRGSEAIVGSLSHIYKSEQGGGAHIAGVLLSTLENKPDGTFEINELEKRIRGSDIH 339
+HC SE V + + GGG H++ ++ + + I L I GS H
Sbjct: 42 LHCRSEPSEVHVPRPKAVAAAAAGGGGHLSAIVTKRAAPRSGCSRSIANLRDVIHGSKRH 101
>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
Length = 215
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 388 GGKVLPLKFLDDVSAVCRKHSLAL 459
GG LPL L+ VS VCR S +L
Sbjct: 13 GGAALPLSTLNHVSLVCRSLSTSL 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,867
Number of Sequences: 37544
Number of extensions: 410307
Number of successful extensions: 1409
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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