Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I13
(619 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directe... 35 0.20
AK023799-1|BAB14684.1| 404|Homo sapiens protein ( Homo sapiens ... 32 1.9
BC111558-1|AAI11559.1| 302|Homo sapiens hypothetical protein LO... 31 2.5
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 31 3.3
BC126239-1|AAI26240.1| 575|Homo sapiens zinc finger protein 587... 31 3.3
BC126237-1|AAI26238.1| 575|Homo sapiens zinc finger protein 587... 31 3.3
BC025783-1|AAH25783.1| 575|Homo sapiens zinc finger protein 417... 31 3.3
AK160374-1|BAD18717.1| 564|Homo sapiens FLJ00309 protein protein. 31 3.3
AK027616-1|BAB55235.1| 575|Homo sapiens protein ( Homo sapiens ... 31 3.3
M81735-1|AAA35768.1| 1107|Homo sapiens DNA polymerase delta prot... 30 7.5
M80397-1|AAA58439.1| 1107|Homo sapiens DNA polymerase-delta cata... 30 7.5
BC008800-1|AAH08800.1| 1107|Homo sapiens polymerase (DNA directe... 30 7.5
BC004231-1|AAH04231.2| 265|Homo sapiens RNF157 protein protein. 30 7.5
AY129569-1|AAM76971.1| 1107|Homo sapiens polymerase (DNA directe... 30 7.5
AK091467-1|BAC03669.1| 619|Homo sapiens protein ( Homo sapiens ... 30 7.5
AB067504-1|BAB67810.2| 702|Homo sapiens KIAA1917 protein protein. 30 7.5
AK124948-1|BAC86004.1| 347|Homo sapiens protein ( Homo sapiens ... 29 9.9
AK124467-1|BAC85857.1| 193|Homo sapiens protein ( Homo sapiens ... 29 9.9
>AB209560-1|BAD92797.1| 1011|Homo sapiens polymerase (DNA directed),
delta 1, catalytic subunit 125kDa variant protein.
Length = 1011
Score = 35.1 bits (77), Expect = 0.20
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 374 HITCAVERCSR*SSWMTCQRCAGSTRWRCTWTARGCSTRASTWARV--RLASCATVT 538
H+ A ER +R S W T ST W +W + C++ + +WAR RL C T
Sbjct: 902 HVELA-ER-TRCSCWSTACPLTRSTTWSSSWPSPSCASSSPSWARAVPRLCYCGGTT 956
>AK023799-1|BAB14684.1| 404|Homo sapiens protein ( Homo sapiens
cDNA FLJ13737 fis, clone PLACE3000157. ).
Length = 404
Score = 31.9 bits (69), Expect = 1.9
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -3
Query: 311 SSSFISKVPSGLFSRVDRRTPAMCAPP-PCSLL*I*DRLPTIASDPRLLQCTIKAIRISH 135
++S SKVP+ L + T A+ P P S+ + +LPT +S P L+QC + I H
Sbjct: 291 ANSLPSKVPTTL---MPVNTVALKVPANPASVSTVPSKLPT-SSKP-LVQCLLMRSPIQH 345
Query: 134 SPRRVRTEPA---CFPEALTA 81
P T+P C P+ L A
Sbjct: 346 HPNCPSTQPVLAWCHPKCLLA 366
>BC111558-1|AAI11559.1| 302|Homo sapiens hypothetical protein
LOC284837 protein.
Length = 302
Score = 31.5 bits (68), Expect = 2.5
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = -3
Query: 572 AESPLLKQTETESQSRTTRAGLSPKYSHALNSRAPSMCSASECFLHTADTSSRN-FNGST 396
+ SP L + + + ++ AGL S L + +A C L A+T+ + +GS
Sbjct: 215 SSSPCLPPSHCDPGAASSWAGLQ---SLKLLLQVSFQGAADGCSLRDANTNRKGPMHGSD 271
Query: 395 FPPHMLCVFSIATSDVVGSWMSEP 324
FP H LC+ S++ + GSW S P
Sbjct: 272 FP-HRLCLHSMS---LWGSWGSRP 291
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 31.1 bits (67), Expect = 3.3
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = -3
Query: 434 TADTSSRNFNGSTFPPHMLCV-FSIATSDVVGSW-MSEPRILFSSSFISKVPSGLFSRVD 261
TA T R+ + S+ PH +C ++ ATS ++G+ ++EP S+ S P+
Sbjct: 869 TATTHGRSLSPSS--PHTVCTAWTSATSGILGTTHITEP-----STGTSHTPAATTGTTQ 921
Query: 260 RRTPAMCAPPPCS 222
TPA+ +P P S
Sbjct: 922 HSTPALSSPHPSS 934
>BC126239-1|AAI26240.1| 575|Homo sapiens zinc finger protein 587
protein.
Length = 575
Score = 31.1 bits (67), Expect = 3.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 545 ETESQSRTTRAGLSPKYSH 489
+ ESQSRT RAG+SPK +H
Sbjct: 74 QRESQSRTPRAGVSPKKAH 92
>BC126237-1|AAI26238.1| 575|Homo sapiens zinc finger protein 587
protein.
Length = 575
Score = 31.1 bits (67), Expect = 3.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 545 ETESQSRTTRAGLSPKYSH 489
+ ESQSRT RAG+SPK +H
Sbjct: 74 QRESQSRTPRAGVSPKKAH 92
>BC025783-1|AAH25783.1| 575|Homo sapiens zinc finger protein 417
protein.
Length = 575
Score = 31.1 bits (67), Expect = 3.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 545 ETESQSRTTRAGLSPKYSH 489
+ ESQSRT RAG+SPK +H
Sbjct: 74 QRESQSRTPRAGVSPKKAH 92
>AK160374-1|BAD18717.1| 564|Homo sapiens FLJ00309 protein protein.
Length = 564
Score = 31.1 bits (67), Expect = 3.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 545 ETESQSRTTRAGLSPKYSH 489
+ ESQSRT RAG+SPK +H
Sbjct: 63 QRESQSRTPRAGVSPKKAH 81
>AK027616-1|BAB55235.1| 575|Homo sapiens protein ( Homo sapiens
cDNA FLJ14710 fis, clone NT2RP3000632, weakly similar to
ZINC FINGER PROTEIN 84. ).
Length = 575
Score = 31.1 bits (67), Expect = 3.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 545 ETESQSRTTRAGLSPKYSH 489
+ ESQSRT RAG+SPK +H
Sbjct: 74 QRESQSRTPRAGVSPKKAH 92
>M81735-1|AAA35768.1| 1107|Homo sapiens DNA polymerase delta protein.
Length = 1107
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 374 HITCAVERCSR*SSWMTCQRCAGSTRWRCTWTARGC 481
H+ ER SR W CQRC GS T+R C
Sbjct: 1043 HLNALEERFSR--LWTQCQRCQGSLHEDVICTSRDC 1076
>M80397-1|AAA58439.1| 1107|Homo sapiens DNA polymerase-delta
catalytic-subunit protein.
Length = 1107
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 374 HITCAVERCSR*SSWMTCQRCAGSTRWRCTWTARGC 481
H+ ER SR W CQRC GS T+R C
Sbjct: 1043 HLNALEERFSR--LWTQCQRCQGSLHEDVICTSRDC 1076
>BC008800-1|AAH08800.1| 1107|Homo sapiens polymerase (DNA directed),
delta 1, catalytic subunit 125kDa protein.
Length = 1107
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 374 HITCAVERCSR*SSWMTCQRCAGSTRWRCTWTARGC 481
H+ ER SR W CQRC GS T+R C
Sbjct: 1043 HLNALEERFSR--LWTQCQRCQGSLHEDVICTSRDC 1076
>BC004231-1|AAH04231.2| 265|Homo sapiens RNF157 protein protein.
Length = 265
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 253 VLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLVAIENTHNMCGGKVLPLKFLDDVSA 432
VLL T E DGTF + L+++ + + IEN +N KV + + D SA
Sbjct: 65 VLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDE-VSDNSA 123
Query: 433 VC 438
C
Sbjct: 124 EC 125
>AY129569-1|AAM76971.1| 1107|Homo sapiens polymerase (DNA directed),
delta 1, catalytic subunit protein.
Length = 1107
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 374 HITCAVERCSR*SSWMTCQRCAGSTRWRCTWTARGC 481
H+ ER SR W CQRC GS T+R C
Sbjct: 1043 HLNALEERFSR--LWTQCQRCQGSLHEDVICTSRDC 1076
>AK091467-1|BAC03669.1| 619|Homo sapiens protein ( Homo sapiens
cDNA FLJ34148 fis, clone FCBBF3012546. ).
Length = 619
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 253 VLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLVAIENTHNMCGGKVLPLKFLDDVSA 432
VLL T E DGTF + L+++ + + IEN +N KV + + D SA
Sbjct: 179 VLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDE-VSDNSA 237
Query: 433 VC 438
C
Sbjct: 238 EC 239
>AB067504-1|BAB67810.2| 702|Homo sapiens KIAA1917 protein protein.
Length = 702
Score = 29.9 bits (64), Expect = 7.5
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 253 VLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLVAIENTHNMCGGKVLPLKFLDDVSA 432
VLL T E DGTF + L+++ + + IEN +N KV + + D SA
Sbjct: 240 VLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDE-VSDNSA 298
Query: 433 VC 438
C
Sbjct: 299 EC 300
>AK124948-1|BAC86004.1| 347|Homo sapiens protein ( Homo sapiens
cDNA FLJ42958 fis, clone BRSTN2010750. ).
Length = 347
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 518 RAGLSPKYSHALNSRAPSMCSASECFLHTADTSSRNFNGSTFPP 387
R +S SH R PS C+A LH T+SR PP
Sbjct: 16 RGSVSRCCSHREFRRQPSPCAAGIGLLHLGSTASRQVKPPRLPP 59
>AK124467-1|BAC85857.1| 193|Homo sapiens protein ( Homo sapiens
cDNA FLJ42476 fis, clone BRACE2031389. ).
Length = 193
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 518 RAGLSPKYSHALNSRAPSMCSASECFLHTADTSSRNFNGSTFPP 387
R +S SH R PS C+A LH T+SR PP
Sbjct: 16 RGSVSRCCSHREFRRQPSPCAAGIGLLHLGSTASRQVKPPRLPP 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,944,147
Number of Sequences: 237096
Number of extensions: 2192843
Number of successful extensions: 7509
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7509
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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