Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I13
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70309-13|CAL36512.2| 383|Caenorhabditis elegans Hypothetical p... 177 7e-45
Z70309-12|CAB54293.3| 413|Caenorhabditis elegans Hypothetical p... 177 7e-45
Z70309-11|CAB54291.3| 408|Caenorhabditis elegans Hypothetical p... 177 7e-45
AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical ... 32 0.38
AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical ... 32 0.38
Z68493-11|CAA92798.2| 174|Caenorhabditis elegans Hypothetical p... 30 1.2
Z81584-1|CAB04679.1| 217|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical p... 28 6.1
Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical p... 28 6.1
U41273-4|AAA82456.1| 257|Caenorhabditis elegans Hypothetical pr... 28 6.1
U40028-6|AAA81117.1| 241|Caenorhabditis elegans Hypothetical pr... 28 6.1
AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear recep... 28 6.1
AC024821-2|AAP86610.1| 588|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z70309-13|CAL36512.2| 383|Caenorhabditis elegans Hypothetical
protein R102.4c protein.
Length = 383
Score = 177 bits (430), Expect = 7e-45
Identities = 90/206 (43%), Positives = 128/206 (62%)
Frame = +1
Query: 1 RARGIQLFGNNVSGEDPTVNALENKN*AVNASGKQAGSVRTLRGLWLILIALMVHCNRRG 180
RA + G++V GED T N LE + GK+AG T G L+A+M HC +RG
Sbjct: 53 RAMAEAIVGDDVYGEDTTTNRLEQR--CAELFGKEAGLFVT-SGTMGNLLAIMAHC-QRG 108
Query: 181 SEAIVGSLSHIYKSEQGGGAHIAGVLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLV 360
E IVG +HI++ EQG A AG+ +TLE KPDGT ++N++E+ IR D H P + L+
Sbjct: 109 EEIIVGRYNHIHRWEQGNYAQFAGISATTLEVKPDGTMDLNDIEQAIRVKDCHMPASKLI 168
Query: 361 AIENTHNMCGGKVLPLKFLDDVSAVCRKHSLALHMDGARLFNACEYLGESPARVVRDCDS 540
IENTHN GGK LP++++ V + + L +HMDGAR++NA S +++ D+
Sbjct: 169 CIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGARIYNAAVASNCSVSKIASFADT 228
Query: 541 VSVCFSKGLSAPVGSALLGTCHFIEQ 618
V +CFSKGL APVGS ++G FI++
Sbjct: 229 VQMCFSKGLGAPVGSIVVGPKDFIDR 254
>Z70309-12|CAB54293.3| 413|Caenorhabditis elegans Hypothetical
protein R102.4b protein.
Length = 413
Score = 177 bits (430), Expect = 7e-45
Identities = 90/206 (43%), Positives = 128/206 (62%)
Frame = +1
Query: 1 RARGIQLFGNNVSGEDPTVNALENKN*AVNASGKQAGSVRTLRGLWLILIALMVHCNRRG 180
RA + G++V GED T N LE + GK+AG T G L+A+M HC +RG
Sbjct: 83 RAMAEAIVGDDVYGEDTTTNRLEQR--CAELFGKEAGLFVT-SGTMGNLLAIMAHC-QRG 138
Query: 181 SEAIVGSLSHIYKSEQGGGAHIAGVLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLV 360
E IVG +HI++ EQG A AG+ +TLE KPDGT ++N++E+ IR D H P + L+
Sbjct: 139 EEIIVGRYNHIHRWEQGNYAQFAGISATTLEVKPDGTMDLNDIEQAIRVKDCHMPASKLI 198
Query: 361 AIENTHNMCGGKVLPLKFLDDVSAVCRKHSLALHMDGARLFNACEYLGESPARVVRDCDS 540
IENTHN GGK LP++++ V + + L +HMDGAR++NA S +++ D+
Sbjct: 199 CIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGARIYNAAVASNCSVSKIASFADT 258
Query: 541 VSVCFSKGLSAPVGSALLGTCHFIEQ 618
V +CFSKGL APVGS ++G FI++
Sbjct: 259 VQMCFSKGLGAPVGSIVVGPKDFIDR 284
>Z70309-11|CAB54291.3| 408|Caenorhabditis elegans Hypothetical
protein R102.4a protein.
Length = 408
Score = 177 bits (430), Expect = 7e-45
Identities = 90/206 (43%), Positives = 128/206 (62%)
Frame = +1
Query: 1 RARGIQLFGNNVSGEDPTVNALENKN*AVNASGKQAGSVRTLRGLWLILIALMVHCNRRG 180
RA + G++V GED T N LE + GK+AG T G L+A+M HC +RG
Sbjct: 78 RAMAEAIVGDDVYGEDTTTNRLEQR--CAELFGKEAGLFVT-SGTMGNLLAIMAHC-QRG 133
Query: 181 SEAIVGSLSHIYKSEQGGGAHIAGVLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLV 360
E IVG +HI++ EQG A AG+ +TLE KPDGT ++N++E+ IR D H P + L+
Sbjct: 134 EEIIVGRYNHIHRWEQGNYAQFAGISATTLEVKPDGTMDLNDIEQAIRVKDCHMPASKLI 193
Query: 361 AIENTHNMCGGKVLPLKFLDDVSAVCRKHSLALHMDGARLFNACEYLGESPARVVRDCDS 540
IENTHN GGK LP++++ V + + L +HMDGAR++NA S +++ D+
Sbjct: 194 CIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGARIYNAAVASNCSVSKIASFADT 253
Query: 541 VSVCFSKGLSAPVGSALLGTCHFIEQ 618
V +CFSKGL APVGS ++G FI++
Sbjct: 254 VQMCFSKGLGAPVGSIVVGPKDFIDR 279
>AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical
protein T04C4.1b protein.
Length = 893
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 519 ASRTLAQVLARVEQPRAVHV--QRQRVLPAHR*HVIQELQREH 397
ASR +A V+ARVE RAV V +RQ P H QEL H
Sbjct: 23 ASRPVAPVVARVEGLRAVPVGHRRQHSSPGHLQQFQQELHARH 65
>AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical
protein T04C4.1a protein.
Length = 955
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 519 ASRTLAQVLARVEQPRAVHV--QRQRVLPAHR*HVIQELQREH 397
ASR +A V+ARVE RAV V +RQ P H QEL H
Sbjct: 84 ASRPVAPVVARVEGLRAVPVGHRRQHSSPGHLQQFQQELHARH 126
>Z68493-11|CAA92798.2| 174|Caenorhabditis elegans Hypothetical
protein C33A12.15 protein.
Length = 174
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 211 IYKSEQGGGAHIAGVLLSTLENKPDGTFEINELEKRIRGSDIHEPTTSLVAI 366
I+ S G H+ G LL KP EI EK I G D H TT+ ++
Sbjct: 31 IFVSAGDGAFHVRGKLLCN--GKPYENAEIELYEKNIIGKDTHLVTTNTTSL 80
>Z81584-1|CAB04679.1| 217|Caenorhabditis elegans Hypothetical
protein T04C12.1 protein.
Length = 217
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +1
Query: 397 VLPLKFLDDVSAVCRKHSLALHMDGARLFNACEYLGESPARVVRDCDSVSVCFSKGLSAP 576
V+P ++D ++ +K + + R CE+ G P +R+ V F+ + P
Sbjct: 126 VMPPPYMDPANSQAKKQRQSFRQESIRKLKVCEHCGALPHAQIRNLPEEQV-FTWPAARP 184
Query: 577 VGSALLGTCHFI 612
+ S + FI
Sbjct: 185 INSIQQDSRQFI 196
>Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical
protein ZC410.1b protein.
Length = 394
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 172 RRGSEAIVGSLSHIYKSEQGGGAHIAGVLLSTL 270
RR I+G LS + S GGG H G LL ++
Sbjct: 325 RRQRNIIIGFLSKMCHSPGGGGEHRVGELLMSM 357
>Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical
protein ZC410.1a protein.
Length = 459
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 172 RRGSEAIVGSLSHIYKSEQGGGAHIAGVLLSTL 270
RR I+G LS + S GGG H G LL ++
Sbjct: 390 RRQRNIIIGFLSKMCHSPGGGGEHRVGELLMSM 422
>U41273-4|AAA82456.1| 257|Caenorhabditis elegans Hypothetical
protein C26B9.2 protein.
Length = 257
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 359 TSDVVGSWMSEPRILFSSSFISKVPSGLFSRVDRRTPAMCAPPPCS 222
T D + +S+P + ++ K+P G R P C PP C+
Sbjct: 159 TKDQIARLLSDPSLHYNRQIHPKLPVGALPR--EYEPIACKPPLCN 202
>U40028-6|AAA81117.1| 241|Caenorhabditis elegans Hypothetical
protein T05A7.2 protein.
Length = 241
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 491 HALNSRAPSMCSASECFLHTADTSSRNFNGSTFPPHML--CVFSIATSDVVGSWMSEPRI 318
+ L S PS C + DT+ NF FP + CV+S + + G W+S
Sbjct: 87 YCLESNNPSSCYFDDDL--GTDTAFNNF-AKGFPNTDIGGCVYSATSGSLAGQWISSECD 143
Query: 317 LFSSSFISKVP 285
+++ ++P
Sbjct: 144 NVEMAYVCEIP 154
>AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear receptor
NHR-11 protein.
Length = 459
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 172 RRGSEAIVGSLSHIYKSEQGGGAHIAGVLLSTL 270
RR I+G LS + S GGG H G LL ++
Sbjct: 390 RRQRNIIIGFLSKMCHSPGGGGEHRVGELLMSM 422
>AC024821-2|AAP86610.1| 588|Caenorhabditis elegans Hypothetical
protein Y55B1AR.2b protein.
Length = 588
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 575 GAESPLLKQTETESQSRTTRAGLSPKYSHALNSRAPSMCSASECFLHTADTSSRNFNGST 396
G +P+L T T SRTTR+ L +++ + + S+ + T+ R F+G
Sbjct: 376 GNTNPILSTTTTPLSSRTTRSVLRVHNVNSVPRPSVQNSTMSKSSVTANQTNRRAFSGVR 435
Query: 395 FP 390
P
Sbjct: 436 MP 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,195
Number of Sequences: 27780
Number of extensions: 327966
Number of successful extensions: 1022
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -