Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I13
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 304 ELEKRIRGSDIHEPTTS 354
           EL+KR +   IHEP T+
Sbjct: 346 ELQKRCKWMGIHEPETT 362


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 512 GLS-PKYSHALNSRAPSMCSASECFLHTADTSS 417
           G+S PKY  AL ++ PS+  A+E       T+S
Sbjct: 332 GISHPKYRAALFAKFPSLACAAEPSSDAVSTTS 364


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 28   NNVSGEDPTVNALENKN*AVNASGKQAGSVRTLRGL 135
            N +S  +   + L N+N  VNA GK   +   +R L
Sbjct: 1881 NEISEAECDRDQLVNRNYGVNARGKDGMTTEEMRKL 1916



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 392  PPHMLCVFSIATSDVVGSWMSEP 324
            PPH     ++ +  +  SWMS P
Sbjct: 1084 PPHDTTCTTLTSQTIRISWMSPP 1106


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 304 ELEKRIRGSDIHEPTTS 354
           EL+KR +   IHEP T+
Sbjct: 346 ELQKRCKWMGIHEPETT 362


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 320  ILFSSSFISKVPSGLFSRVDRRTPAMCAPPP 228
            ++FS+SF SKV +   +  +  TP M A  P
Sbjct: 1133 VIFSTSFDSKVMTRPDTDSENWTPKMMAVEP 1163


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 237 RAHRWRSSVHSG 272
           R HR R SVH+G
Sbjct: 306 RIHRGRGSVHNG 317


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 596 PRSAEPTGAESPLLKQTETESQSRTTRAGLSPK 498
           PR+ +     S +  ++ETES + +T+  +  K
Sbjct: 211 PRNGKRKRKSSTIENESETESNASSTKTKMRRK 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,442
Number of Sequences: 438
Number of extensions: 4155
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)