Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I11
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 155 3e-38
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 155 3e-38
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 73 1e-13
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 73 1e-13
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 73 1e-13
Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z75547-14|CAA99901.2| 461|Caenorhabditis elegans Hypothetical p... 28 4.9
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 28 4.9
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 28 4.9
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 28 6.5
U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical p... 27 8.6
U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical p... 27 8.6
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 155 bits (376), Expect = 3e-38
Identities = 75/135 (55%), Positives = 96/135 (71%), Gaps = 1/135 (0%)
Frame = +2
Query: 239 RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 418
R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 419 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG-G 595
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG G
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121
Query: 596 RILTTHGRRDLDRIA 640
RIL+ GR+DLDRIA
Sbjct: 122 RILSKQGRKDLDRIA 136
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 155 bits (376), Expect = 3e-38
Identities = 75/135 (55%), Positives = 96/135 (71%), Gaps = 1/135 (0%)
Frame = +2
Query: 239 RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 418
R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 419 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG-G 595
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG G
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121
Query: 596 RILTTHGRRDLDRIA 640
RIL+ GR+DLDRIA
Sbjct: 122 RILSKQGRKDLDRIA 136
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +1
Query: 61 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 195
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KF
Sbjct: 82 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKF 126
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +1
Query: 61 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 195
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KF
Sbjct: 51 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKF 95
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +1
Query: 61 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 195
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KF
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKF 156
>Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical
protein T05F1.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 410 QHSVHKTNQGHREPVP*N--ELSLPSPYDLEPSLCRSFSSER 291
QH+ NQGHR P P + +LS P P + SL S R
Sbjct: 82 QHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSESSR 123
>Z75547-14|CAA99901.2| 461|Caenorhabditis elegans Hypothetical
protein R11D1.7 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.9
Identities = 27/69 (39%), Positives = 35/69 (50%)
Frame = -3
Query: 330 SGTFTLPIFFK*AATVLTILSCSTSFTVTERILPCVPRAEFGTRQKFDGSLDFINFLCHG 151
SGTF L +F TVL L+ S F V +R L C PR F +Q F L +I F +
Sbjct: 8 SGTFILEVF-----TVLGALAAS--FLVEKRFL-CAPRMIFVFQQTF--MLIYIIFFLNY 57
Query: 150 FLVG*ETRE 124
F + +T E
Sbjct: 58 FNIDKQTDE 66
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 280 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 369
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 280 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 369
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 73 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK--FLPRAEFGTRNTRQDAFR 246
I +IP G GLN A ++ L ++M +K+++ +IK + P + + R +A R
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIKTFWSPELKRERQMRRDEATR 201
Query: 247 YSE 255
++
Sbjct: 202 IAQ 204
>U23510-11|AAO38610.1| 444|Caenorhabditis elegans Hypothetical
protein R12C12.1b protein.
Length = 444
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 173 KSREPSNFCLVPNSARGT---QGKMRSVTVKDVEQD 271
K E N CL+P SA GT +M ++ V V+ D
Sbjct: 78 KGEEQRNICLIPTSAHGTNPASAQMANMKVVVVDSD 113
>U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical
protein R12C12.1a protein.
Length = 979
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 173 KSREPSNFCLVPNSARGT---QGKMRSVTVKDVEQD 271
K E N CL+P SA GT +M ++ V V+ D
Sbjct: 613 KGEEQRNICLIPTSAHGTNPASAQMANMKVVVVDSD 648
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,961
Number of Sequences: 27780
Number of extensions: 293312
Number of successful extensions: 702
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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