Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I09
(414 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 0.87
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 2.7
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 3.5
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy... 25 3.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 4.7
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 4.7
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 6.1
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 25 6.1
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 6.1
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 25 6.1
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 6.1
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 6.1
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.1
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 0.87
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +3
Query: 3 TRVTYQKSSNRKRRDYRPIEVSPLVRAPENEWNGATLQFYNRNINSPTPSASSRTGKICQ 182
T+V ++ + K+R SP +AP N++ T + ++++ PTP S R + +
Sbjct: 66 TKVDFKFQTPTKQRAETEANESP--KAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLE 123
Query: 183 CWNSETDS 206
+ DS
Sbjct: 124 DMSPIADS 131
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 166 VLLLALGVGEFIFLL*NCNVAPFHSFSGALTRGLTSIGL 50
VLL+ LG EF+ +L N V F G + GL GL
Sbjct: 664 VLLIVLGWNEFMAILRNPFVFMILMFGGTVVYGLYISGL 702
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 149 WCWRIYISVIELQRRSVPFVFGC 81
+CW IY V + + F FGC
Sbjct: 54 YCWYIYSEVPSVSSKFRSFTFGC 76
>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 152
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 173 NLPMLEFGNRFVGLQTEHGLTGDTQIEK 256
++ LE G + + QTE L GDT I++
Sbjct: 58 SISKLEEGEQMINQQTETTLEGDTHIQQ 85
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 139 RQHQAPAAEPVKSANAGIRKPIRGTTNR 222
+ ++A +P +S+ IRKPI +TN+
Sbjct: 486 QDNKALFVKPERSSTVTIRKPIESSTNK 513
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 234 VRPCSVCSPTNRFPNSSIGRFYRFCCWRLVLANLYFC 124
+RPC C+ R+P ++ +R C + + ++YFC
Sbjct: 80 IRPCICCNSVLRYPAQAM--CFR-CSLCMTVNDVYFC 113
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 188 PALADFTGSAAGAWCWRIYISVI 120
P + DF + WCW +I++I
Sbjct: 241 PIIGDFICQSYLGWCWVFWINMI 263
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 141 PTPSASSRTGKICQCWNSETDSWDYKQSTASQEIHKLR-KLELSYAEVLRN 290
P P R K C C E + + +++A E KL E+ + E L++
Sbjct: 187 PEPGKKKRACKNCTCGLREMEEHESSKTSAQLEAVKLTDTTEVDFTEKLKS 237
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -2
Query: 149 WCWRIYISVIELQRRSVPFVFGC 81
+CW IY V + F FGC
Sbjct: 54 YCWYIYSEVPSASSKFRSFTFGC 76
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -1
Query: 237 PVRPCSVCSPTNRFPNSSIGRFYRFCCWRL 148
PVRPC +P F N G Y W L
Sbjct: 2 PVRPCIHFTPPEGFMNDPNGLVYSNGKWHL 31
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -2
Query: 149 WCWRIYISVIELQRRSVPFVFGC 81
+CW IY V + F FGC
Sbjct: 54 YCWYIYSEVPSASSKFRSFTFGC 76
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 24.6 bits (51), Expect = 6.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 210 DYKQSTASQEIHKLRKLELSYAEVLRNADKTKVRRKRHQ*IYFYL--LHIYTIDPSY 374
DY QST Q + + S A V ++ +K V KR+ YFY + +ID Y
Sbjct: 201 DYTQSTHEQTLSS--PISKS-ASVSKSENKALVNNKRYSDSYFYFSKMRRISIDVDY 254
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -2
Query: 149 WCWRIYISVIELQRRSVPFVFGC 81
+CW IY V + F FGC
Sbjct: 54 YCWYIYSEVPSASSKFRSFTFGC 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,609
Number of Sequences: 5004
Number of extensions: 36952
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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