Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I09
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853...    30   0.84 
12_01_0235 + 1765117-1766770,1766881-1766984                           29   1.9  
06_03_1000 - 26778993-26779478                                         27   5.9  
04_03_0242 + 13253268-13253317,13254522-13254573,13254654-132547...    27   5.9  
06_02_0097 + 11710560-11710859,11712605-11713270                       27   7.8  
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241...    27   7.8  

>07_03_0108 +
           13481249-13481464,13484556-13484693,13485320-13485388,
           13485462-13485599,13485685-13485802,13486265-13486347,
           13486921-13487013,13487801-13487969,13488056-13488129,
           13488448-13488633,13490009-13490101,13490469-13490534,
           13490618-13490785,13491199-13491319,13492072-13492141,
           13492389-13492476,13492565-13492685,13492964-13493157,
           13493239-13493347,13493488-13493643,13493858-13493957,
           13494115-13494288,13494549-13494694,13494796-13494860,
           13495013-13495018
          Length = 986

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 162 RTGKICQCWNSETDSWDYKQSTAS 233
           RTGK+   WN  TD+WDY   T S
Sbjct: 137 RTGKLVITWN--TDAWDYGPGTTS 158


>12_01_0235 + 1765117-1766770,1766881-1766984
          Length = 585

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 19  RSHRIGKGETIDLSKSVLL*EHPKTNGTERRCSSITEI*IRQHQAPAAE 165
           R  R GKGE +DL + ++       +G  R    + E  I++H +P  +
Sbjct: 155 RKRRQGKGEVVDLRELLMSCAQAVASGNRRSAGELLEQ-IKRHSSPTGD 202


>06_03_1000 - 26778993-26779478
          Length = 161

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 240 SPVRPCSVCSPTNRFPNSSIGRFYRFCC 157
           S +RP +VC P  R P  +  R  + CC
Sbjct: 84  SALRPATVCPPAPRKPRPAGKRMTKRCC 111


>04_03_0242 +
           13253268-13253317,13254522-13254573,13254654-13254730,
           13254804-13254937,13255645-13255815,13255894-13256035,
           13256257-13256443,13256932-13256998,13257846-13257892,
           13258623-13258629,13258716-13258786,13259229-13259339,
           13260404-13260466,13261050-13261187,13261721-13261826,
           13262101-13262147,13262416-13262460,13262538-13262604,
           13262683-13262737,13263008-13263214,13264723-13264810,
           13264940-13265021,13265274-13265320,13265782-13265941,
           13266058-13266224,13266360-13266659,13267144-13267200
          Length = 914

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 279 LQRKIVRVFSICVSPVRPCSVCSPTNRFPNSSIGRF--YRFCCWRLVLA 139
           L  K+   F +C  P RP  VC    +    S+  F  Y+ C   L+LA
Sbjct: 504 LMYKVYNYFGVCKVPYRPTFVCHTEYQTSKCSLKYFEHYQQCSSILLLA 552


>06_02_0097 + 11710560-11710859,11712605-11713270
          Length = 321

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -1

Query: 252 SICVSP-VRPCSVCSPTNRFP--NSSIGRFYRFCCWRLVLANLYFCYRTATSLRSI 94
           S+ + P V  CS+C  + R P      G    F CW  +    + C R A   R+I
Sbjct: 77  SVQIDPDVLDCSICFESLRPPLYQCQNGHVACFSCWSKLSNKCHICSRDAKFARNI 132


>01_06_0767 +
           31823659-31823734,31823859-31823979,31824078-31824189,
           31824278-31824691,31824795-31824898,31825017-31825136,
           31825344-31825467,31826567-31826680,31826789-31826980,
           31827328-31827424,31827505-31827653,31828729-31829013
          Length = 635

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 203 IGFRIPALADFTGSAAGAWCWRIY--ISVIELQRRSVPFVFGC 81
           + F    L ++ G   G W W+I   IS  E++ R +P   GC
Sbjct: 300 LSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGC 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,019,724
Number of Sequences: 37544
Number of extensions: 218274
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)