Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I08
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 30 0.56
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951... 30 0.56
09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014... 29 0.97
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913 29 1.3
02_02_0467 - 10620976-10621299 29 1.3
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 28 2.2
08_02_1515 + 27637966-27638679 28 3.0
04_04_1525 - 34156813-34157058,34157245-34157435,34157885-341579... 28 3.0
03_05_0662 + 26540625-26541152 27 5.2
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 27 5.2
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 27 6.9
02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545 27 6.9
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 30.3 bits (65), Expect = 0.56
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 18 DPPGCRNRHEGRIWFSTYCDFSHCLQVKEQLR 113
D P R R++ ++WF +C F ++ ++Q R
Sbjct: 15 DHPPTRCRYQAKVWFRRHCFFQSLVRARDQKR 46
>07_03_0591 +
19792694-19792738,19794190-19794509,19795104-19795161,
19798000-19798056,19798373-19798440,19798454-19798543,
19798619-19798820,19798902-19798988,19799642-19799719,
19799815-19800040,19800260-19800483,19801988-19802014,
19802470-19802518,19802594-19802688,19802778-19802864,
19802973-19803100,19803198-19803294,19803563-19803788,
19803888-19804294
Length = 856
Score = 30.3 bits (65), Expect = 0.56
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 55 FGFLRIAISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHIVMSGECARV 198
FG L + S I+F +KN F++V+ S+ Y++ R V + C V
Sbjct: 803 FGLLMVITSFIIFHVKNEFLLVTALCSMSFYNQA-RFDAVSNQTCGFV 849
>09_04_0663 +
19299275-19299479,19300842-19300948,19301222-19301413,
19301933-19302043,19302374-19302673
Length = 304
Score = 29.5 bits (63), Expect = 0.97
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 318 TCFCAVSSLDLICCNILNC*QKFMSP*YFRKRSKEAHRNAYSCALATHNNVDP 160
TCFC+ SL + C IL+C S Y + + R YSC+ H+ P
Sbjct: 240 TCFCSAKSLIELTCCILDC---TTSLEYL---TLDTTRGVYSCSTGKHSQCFP 286
>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
Length = 213
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 18 DPPGCRNRHEGRIWFSTYCDFSHCLQVKEQLR 113
D P R R + ++WF +C F ++ ++Q R
Sbjct: 27 DHPPIRCRSQAKVWFRRHCFFQSLVRARDQKR 58
>02_02_0467 - 10620976-10621299
Length = 107
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 18 DPPGCRNRHEGRIWFSTYCDFSHCLQVKEQLR 113
D P R R + ++WF +C F ++ ++Q R
Sbjct: 15 DHPPTRCRSQAKVWFRRHCFFQSLVRARDQKR 46
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 106 NFVIVSDRQSIFSYDRCLRIHIVMSGECARVGISMSFLGPF 228
N +V R I D R+H G+ RV I M L PF
Sbjct: 165 NVTVVLQRIHILDIDLAWRMHKASDGQRRRVQICMGLLKPF 205
>08_02_1515 + 27637966-27638679
Length = 237
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 250 KLLSTIKYVTTDQIETTNCTKTSSAETPLCTTQLRTLEFLRVDC 381
KLL+ + +T +E+T+C + ETP + T + +V C
Sbjct: 155 KLLAEAREITVSLLESTSCFLSKKIETPKWSLVSATFQKSKVMC 198
>04_04_1525 -
34156813-34157058,34157245-34157435,34157885-34157956,
34158351-34158419,34158531-34158639,34158872-34158987,
34159117-34159210,34159289-34159460,34159545-34159669
Length = 397
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +1
Query: 1 GGV*LWIPRAAGIGTREEFGFLRIAISLIVFRLKNNFVIVSDRQSIFSYDRCLRIH 168
GG LW+ R + F+ +A+ ++ R+ +F +R + +YD+ +++H
Sbjct: 172 GGNSLWVDRFLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIKLH 227
>03_05_0662 + 26540625-26541152
Length = 175
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 86 MREIAIRRKPNSSLVPIPA 30
MRE A+ R+P S++P+PA
Sbjct: 134 MREFALLRQPRLSVMPVPA 152
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 116 ITKLFFNLKTMREIAIRRKPNSSLVP 39
I KL FN T+RE RKP + + P
Sbjct: 565 IKKLSFNASTLRETETPRKPFAQITP 590
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 284 SVVTYLIVDKSLCHLDIFEKGPRKLIEMPTLAHSPLI 174
+VVTY ++ + LCH ++G + L M P++
Sbjct: 343 NVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIV 379
>02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545
Length = 358
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 250 YVTLIFSKKVQGSSSKCLLLRTRHS*QCGSEDTCRS*RSTGGQRQSRSCSL 98
++ L K++ + +C R ++ +T S R G R SRSCS+
Sbjct: 304 HLCLFCHKRILEADGRCPACRKQYISASSGGETVGSEREMGNLRLSRSCSM 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,734,425
Number of Sequences: 37544
Number of extensions: 202609
Number of successful extensions: 512
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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