Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I08
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    29   1.5  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   2.6  
U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical p...    27   3.5  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   3.5  
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    27   4.6  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    27   4.6  
Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    26   8.1  

>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 274 VTTDQIETTNCTKTSSAETPLCTTQLRT 357
           +TT + +TT   +T+SA T L TTQ +T
Sbjct: 107 ITTTREQTTTTLRTTSASTTLSTTQPQT 134


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 274 VTTDQIETTNCTKTSSAETPLCTTQLRT 357
           +TT + +TT   +T+SA T L TTQ +T
Sbjct: 107 ITTTREQTTTTLRTTSASTTLSTTQPQT 134


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 247  HKLLSTIKYVTTDQIETTNCTKTSSAETPLCTTQLRTLEFLRVD 378
            H L+ T      ++IETTN  KT  A        L+  E L +D
Sbjct: 2129 HSLIDTYIIAPIEKIETTNALKTLIAVISASQNSLKAQELLVLD 2172


>U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical
           protein T03F1.1 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 69  YCDFSHCLQ-VKEQLRDCL*PPVDLQL 146
           YCD SHCLQ  KE        PVDL++
Sbjct: 312 YCDDSHCLQRQKEYEEKVANQPVDLEV 338


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 174  NNVDPKTPVVAEDRLAVRDNHEVVL*PEDNERNRNT*KTKFFPRADSCSP 25
            +NV   T   +E  L + +  EV    ED   NRN+ K +     ++CSP
Sbjct: 1235 SNVSDVTFTPSEATLKIGEFEEVTAQAEDENGNRNSCKFQVAYAPEACSP 1284


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 73  AISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHIVMSGE 186
           + SL V +L NN + +  +Q   S   CLR  I + GE
Sbjct: 531 SFSLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGE 568


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           a protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 73  AISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHIVMSGE 186
           + SL V +L NN + +  +Q   S   CLR  I + GE
Sbjct: 568 SFSLEVLKLNNNGLGIGGKQIAKSLTECLRKSIAVGGE 605


>Z49126-1|CAA88938.2|  605|Caenorhabditis elegans Hypothetical
           protein DH11.1 protein.
          Length = 605

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 84  HCLQVKEQLRDCL*PPVDLQLRQVSSDPHCYEW 182
           H    KEQ ++C+ P +D+  R + +D     W
Sbjct: 119 HWKLTKEQFKECIAPSIDIVSRALQTDMVIPNW 151


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 61   FLRIAISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHI 171
            F  +A  +I+F L  NF+ VS+ + +    RCL + I
Sbjct: 1626 FRELAEPIIIFDLYENFLNVSEVEDMGERVRCLSVMI 1662


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,273,423
Number of Sequences: 27780
Number of extensions: 183693
Number of successful extensions: 565
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)