Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_I03
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   0.88 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.5  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   1.5  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   2.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    26   2.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   6.2  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   6.2  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.2  

>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 416 PLQSLPEVDAVSSPCFKGPFDLK 348
           PL S+P   ++ S  FK PF+LK
Sbjct: 317 PLTSIPSTPSIRSHVFKPPFNLK 339


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 10  SPDNDPRSTRRSRIDISPVRYSNRKGSGSPVE 105
           SPD D RS +R+    SPV ++ +K   SPVE
Sbjct: 156 SPDYDRRSPKRNHRSPSPVSFAPQK---SPVE 184


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 167 TEAMKLQSLDEYRYIIVPSRHRITTTHVVKFAEVHLKKS 283
           + A KL+  D  ++ +  S  R + +H++     HLKKS
Sbjct: 596 SSASKLEMSDSSKHHLSRSSSRFSKSHIISQLHNHLKKS 634


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 5   EAHRTTIHDPHADLESIYPQSATLTEKVAVVL 100
           + +R T+ D H  L  IY  S TLTE  + +L
Sbjct: 225 QKYRVTMSDNHVWLIYIYGDSLTLTESTSQML 256


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 386 VSSPCFKGPFDLKHDSLVFFTLSNKGLRFSLYTIYSFSSEP 264
           VSSP     FD     L+F ++S +  + SLY I SF + P
Sbjct: 152 VSSPVVAA-FDAT--GLIFASVSERKYKISLYNIKSFDARP 189


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 319 LIKDYAFPYIPYTLFQVNLREFYDMCCCNPV 227
           L ++Y FP + + LF +N R       C P+
Sbjct: 512 LFQEYLFPDLQHFLFDMNSRTRATYASCLPI 542


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 220 WDYYVTIFVE*LELHCLGNT---GVEIFPR*LFG 128
           WD +V   V+ + L CLG T    V  FP  LFG
Sbjct: 79  WDAHVVSSVQSIVLICLGYTCLKEVNAFPDKLFG 112


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 295 YIPYTLFQVNLREFYDMCCCNPVSRWDYYVTIFVE 191
           Y PYT+F++  +++++M   +    W Y +  F +
Sbjct: 187 YTPYTVFRMGFKKYFEMIFRH---GWKYIIFAFFD 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,500
Number of Sequences: 5004
Number of extensions: 39005
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)