Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_I02
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 122 5e-29
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 118 8e-28
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 88 7e-19
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 44 1e-05
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.021
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 31 0.085
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 30 0.20
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 29 0.46
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 3.2
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 4.2
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 4.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.2
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 5.6
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 25 7.4
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 7.4
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 25 9.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.8
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 122 bits (293), Expect = 5e-29
Identities = 54/98 (55%), Positives = 74/98 (75%)
Frame = -3
Query: 551 IERMVNEAEKYRTEDEIQKDTIQSKNALESYCFNMKSTMEDEKLKDKITDSDKQIIMDKC 372
I+RMV+EAEKY+ EDE + IQ+KN LESY ++++++++D LKDK+ SDK+ I
Sbjct: 513 IDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAV 572
Query: 371 NDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 258
+TI+WLD N A K+EYE KQKELEGV NPI+ K+YQ
Sbjct: 573 KETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 118 bits (283), Expect = 8e-28
Identities = 52/98 (53%), Positives = 73/98 (74%)
Frame = -3
Query: 551 IERMVNEAEKYRTEDEIQKDTIQSKNALESYCFNMKSTMEDEKLKDKITDSDKQIIMDKC 372
I+RMV EAEKY+ EDE + IQ+KN LESY ++++++++D LKDK+ SDK+ +
Sbjct: 513 IDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAV 572
Query: 371 NDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 258
+TI+WLDSN A K+E+E KQKELE V NPI+ K+YQ
Sbjct: 573 KETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 88.2 bits (209), Expect = 7e-19
Identities = 41/99 (41%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Frame = -3
Query: 551 IERMVNEAEKYRTEDEIQKDTIQSKNALESYCFNMKSTM-EDEKLKDKITDSDKQIIMDK 375
IERMV EAE++ ED+I K+ I+++N LE+Y +++K +DE+L K+ DKQ ++D
Sbjct: 543 IERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDA 602
Query: 374 CNDTIKWLD-SNQLADKEEYEHKQKELEGVCNPIITKLY 261
D +WL+ + A KEE+E ++++L+ V +PI KLY
Sbjct: 603 VEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 44.0 bits (99), Expect = 1e-05
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = -3
Query: 551 IERMVNEAEKYRTEDEIQKDTIQSKNALESYCFNMKSTME--DEKLKDKITDSDKQIIMD 378
IE MV +AEKYR D +K+ I++ N ES C +++S ++ +KL + + + I D
Sbjct: 555 IEAMVADAEKYRASDMARKEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKITD 614
Query: 377 KCNDTIKWLDSNQLADKEEYEHKQKELEGVCNPIITKLYQ 258
K ++ E+ + K E++ + + +Y+
Sbjct: 615 LRETVAKVNAGDEGITSEDMKKKIDEIQQLSLKVFESVYK 654
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.5 bits (73), Expect = 0.021
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 1/133 (0%)
Frame = -1
Query: 523 STGLKMKYRRTLFNRRMLSSRTAST*SPPWKMRSLRTRLLTPISKSSWTSATTPSNGSTR 344
S+ + TL + M SS + S+ SP ++ + +P S SS++S T+ S S+
Sbjct: 310 SSSSSSSFSSTLSSSSMSSSSSFSS-SPTSSSSTISSSSSSP-SSSSFSSTTSSSKSSSS 367
Query: 343 ISWLIRKSMSTSRRNWRVFATRSSRSCTRXXXXXXXXXXXXXPGSLAEH-PVREAQRPAE 167
S + S STS ++ SSR + S + PV A
Sbjct: 368 FSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNS 427
Query: 166 VPDPPSRRSTKHS 128
S S+ HS
Sbjct: 428 TSSRSSSHSSSHS 440
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 31.5 bits (68), Expect = 0.085
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Frame = -3
Query: 539 VNEAEKYRTEDEIQK---DTIQSKNALESYCFNMK---STMEDEKLKDKITDSD-KQIIM 381
+NE +K+ E++ + Q+ ++ N+ +E + K TD+D KQ++
Sbjct: 224 INEVKKFEDEEDTSTPNTSSFQNNSSSLDLSDNLSYLLQYLEGNRSKINATDADVKQLLS 283
Query: 380 DKCNDTIKWLDSNQLADKEEYEHKQK 303
D + KW + ++ +E YE +K
Sbjct: 284 DVKKNKSKWANDQRIGQEELYEAAEK 309
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.3 bits (65), Expect = 0.20
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = -3
Query: 509 DEIQKDTIQSKNALESYCFNMKSTMED--EKLKDKITDSDKQIIMDKCNDTIKWL-DSNQ 339
D++ +T+ KNALE Y ++ ++ ++D ++ S + ++ K D WL + +
Sbjct: 570 DKLVAETVDRKNALEEYIYDTRAKLDDIYAPFTNEEESSKFKEMLTKAED---WLYEEGE 626
Query: 338 LADKEEYEHKQKELEGVCNPI 276
K Y K ++L V PI
Sbjct: 627 DTTKAVYTAKLEDLMRVGGPI 647
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 29.1 bits (62), Expect = 0.46
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Frame = -3
Query: 539 VNEAEKYRTEDEIQKDTIQSKNALESYCFNMKSTMEDEKLKDKITDSDKQIIMDKC---- 372
+NE + Y + Q DT S L S C N S L + D + ++ C
Sbjct: 830 INETDNYDDNETTQSDTATSYEQLASVCVNELS--GKNVLFFYFLEDDSEKLLKACQHFI 887
Query: 371 --NDTIKWLDSNQLADK 327
D+IK L N+ DK
Sbjct: 888 CVKDSIKRLGDNKFEDK 904
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 281 GCKHPPVPSACAHTLPYQP 337
GC H +P A A+ PY P
Sbjct: 386 GCNHTVLPEAAAYPKPYYP 404
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = -3
Query: 539 VNEAEKYRTEDEIQKDTIQSKNALESYCFNMKSTMEDEKLKDKITDSDKQIIMDKCNDTI 360
V + E ++D I +S+NA + S + + +K+K + +K + DK +
Sbjct: 256 VEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKEKQSKIEKYMKSDKSSKNF 315
Query: 359 K 357
K
Sbjct: 316 K 316
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -1
Query: 493 TLFNRRMLSSRTAST*SPPWKMRSLRTRLLTPISKSSWTSATTPSNGST 347
T ++ R+ +S T S K S+ T LT IS S ++T P+NG+T
Sbjct: 174 TPYSNRITNSNT-SVNDITSKYLSVGTITLTTISGSDLYTSTFPANGTT 221
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = -3
Query: 536 NEAEKYRTEDEIQKDTIQSKNALESYCFNMKSTMEDEKLKDKITDSDKQIIMDKCNDTIK 357
+EA K T ++ Q + S N + K +E D + ++DK+ D + +
Sbjct: 47 SEAAKITTNEK-QSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEE 105
Query: 356 WLDSNQLADKEEYEHKQKE 300
D+N+ +++E + ++ E
Sbjct: 106 EADANEEEEEDEEDDEEDE 124
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 5.6
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Frame = -3
Query: 512 EDEIQKDTIQSKNALE----SYCFNMKSTMEDEKLKDKITDSDKQIIMDK---CNDTIKW 354
E EI+K+ ++ E S N+K + E+ L+D D + I++DK T W
Sbjct: 360 EREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVW 419
Query: 353 LDSNQ--LADKEEYEHKQKE 300
++ N+ LA++E K +E
Sbjct: 420 MELNKDYLAEEEAKNLKLQE 439
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 401 SDKQIIMDKCNDTIKWLDSNQLADKEEYEHKQKELEGV 288
S KQ+I+D I L+ ++ E+E K +EGV
Sbjct: 81 SPKQVIVDAAKSLITHLEEIKVNFMREWELKMISVEGV 118
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 419 KDKITDSDKQIIMD-KCNDTIKWLDSNQLADKEEYEHKQKELE 294
++KI +++ I D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 341 QLADKEEYEHKQKELEGVCNPI 276
+L KE+Y+ KEL+ VCN +
Sbjct: 109 KLPTKEQYQAYVKELKPVCNEL 130
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 427 RSLRTRLLTPISKSSWTSATTPSN 356
RSL ++ TP S+ +WT+ TPS+
Sbjct: 297 RSLNSK--TPKSQDNWTTQVTPSS 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,683
Number of Sequences: 5004
Number of extensions: 26531
Number of successful extensions: 252
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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