Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_H24
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.22 
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   1.5  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   2.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   3.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   3.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   4.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   6.2  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   6.2  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +2

Query: 281 SPTSSTGFISQTTLSGTXXXXXXXXXXXXXXXXXXXPQTVLNSDTKGHYYYPSSVNIGYG 460
           SPTS++  IS ++ S +                     T+ +S       + SS      
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSS 341

Query: 461 --SSNLASPIYSSFSSGDSLSPNYNEYQN 541
             SS+ +SP  SSFSS  S S + + + +
Sbjct: 342 TISSSSSSPSSSSFSSTTSSSKSSSSFSS 370


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 267 MYPLCEDCPLKLKPVE-LPWLLDERLDP 187
           +YP C+DC L    ++ LP ++ E +DP
Sbjct: 145 LYPFCKDCSLVFMGLQLLPSMVREGIDP 172


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 431  YPSSVNIGYGSSNLASPIYSSFSSGDSLSPNYNEYQNQYLTT 556
            + S+++ GYG   L SP YS  S G S SP Y      Y  T
Sbjct: 1543 FSSAMSPGYG---LTSPSYSPSSPGYSTSPAYMPSSPSYSPT 1581


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 172 KLRPSRIKPLIEQPRKFYGL 231
           K+R  R KPLIE+P + YG+
Sbjct: 74  KVRRDRGKPLIEEPEENYGI 93


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +2

Query: 248 SSQSGYIGTTVSPTSSTGFISQTTLSGTXXXXXXXXXXXXXXXXXXXPQTVLNSDTKG-H 424
           SS S  + ++ S  SST     ++ + +                     T+L+S T    
Sbjct: 574 SSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTS 633

Query: 425 YYYPSSVNIGYGSSNLASPIYSSFSSGDSLS 517
               SS +I  GSS++ S   S+     SLS
Sbjct: 634 SLMISSSSIISGSSSILSSSISTIPISSSLS 664



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 388 VIKTAYSTAA*LSVSD---LVTGST*SSLTYKASTRCWANSCSYVST 257
           V  T  ST+  +S SD   ++  S  S++T  ASTR    + S +ST
Sbjct: 408 VTTTIVSTSTLISASDSTSIIVSSYVSTVTQPASTRVQTTTVSSIST 454


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 248 SSQSGYIGTTVSPTSSTGFISQTTLSGT 331
           SS S    +T S TSS+  +S TTL+ +
Sbjct: 112 SSSSSAASSTTSTTSSSSLVSSTTLTSS 139


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 476 SPIYSSFSSGDSLSPNYNEY 535
           SP+Y  F+ GD L P  N Y
Sbjct: 311 SPLYVKFNGGDKLFPGDNPY 330


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -2

Query: 161  DTTVLRTMYEEPCTGNRDQHHR*LQPKQLQISKVCTFC*RDANAPDESRLQP 6
            +++ L  ++ +P    +    + ++PK   +S+   F  +  N P E+RL P
Sbjct: 1628 ESSKLSLIHNKPPIYQKVSEQQNVRPKSSGVSRPLLFLQQQKNLPSENRLHP 1679


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +2

Query: 389 PQTV---LNSDTKGHYYYPS-SVNIGYGSSNLASPIYSSFSSGDSLS-PNY 526
           P TV   L ++     YYP+ SV  G  S  +ASP Y+   S  S S P Y
Sbjct: 73  PSTVMPALETNASNAQYYPAYSVINGNNSVQVASPAYTVSHSPHSFSNPRY 123


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 166 ELIRRYSVRCMRNLVLVTETNITASCSQNSCKYRKCVHFVDAMLTLQMNLVYSL 5
           E I+ ++V  +RNL   +E N  A    N+ +  +C+  +DA +++Q  +   L
Sbjct: 348 EEIQCHAVSTLRNLAASSERNKRAIIEANAIQKLRCL-ILDAPVSVQSEMTACL 400


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 395 TVLNSDTKGHYYYPSSVNIGYGSSNLASPIYSSFSSGDSLSPNYNEYQNQYLTTXGHKYQ 574
           +V NS    +Y   S  +I   S NL  P  +S     +   NY +YQN +++   ++  
Sbjct: 259 SVRNSSPNQYYASTSKQSIPSQSQNLQPPQKASVLGTVN---NYRQYQNSFISLNDYQAA 315

Query: 575 Q 577
           Q
Sbjct: 316 Q 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,376
Number of Sequences: 5004
Number of extensions: 41752
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)